CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27330.1	KRH22291	AT2G42580.1	19000166
AT2G27330.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	63.72	74.23
VIT_06s0080g00870.t01	Wine grape	plastid	42.48	43.24
KRH23034	Soybean	mitochondrion	32.74	43.02
KRH10291	Soybean	nucleus	27.43	41.89
KRH67959	Soybean	mitochondrion	42.48	36.92
AT2G27330.1	Thale cress	mitochondrion	37.17	36.21
Os04t0414300-00	Rice	mitochondrion	43.36	35.77
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	42.48	35.29
TraesCS2D01G294000.1	Wheat	mitochondrion	43.36	35.25
TraesCS2B01G312500.1	Wheat	mitochondrion	43.36	35.25
TraesCS2A01G296100.1	Wheat	mitochondrion	42.48	34.53
EES10764	Sorghum	mitochondrion	40.71	34.07
GSMUA_Achr6P35640_001	Banana	nucleus	39.82	32.37
KRG95817	Soybean	mitochondrion	38.94	31.65
Bra000516.1-P	Field mustard	mitochondrion	36.28	30.6
CDX83260	Canola	mitochondrion	36.28	30.6
CDY31170	Canola	mitochondrion, nucleus	35.4	30.3
KRH67547	Soybean	mitochondrion	37.17	30.22
KRH25927	Soybean	mitochondrion, plastid	32.74	25.52
KRH29453	Soybean	nucleus	30.09	24.29
KRH17905	Soybean	cytosol, mitochondrion, nucleus	17.7	24.1
KRH55574	Soybean	mitochondrion, plastid	30.09	23.45
KRG97345	Soybean	mitochondrion	29.2	23.4
KRH29452	Soybean	nucleus	31.86	23.08
KRH09475	Soybean	plastid	36.28	22.78
KRH31570	Soybean	mitochondrion	26.55	20.69
KRH24829	Soybean	mitochondrion	26.55	20.55
KRH50325	Soybean	vacuole	24.78	20.0
KRH29451	Soybean	nucleus	30.09	19.88
KRH24832	Soybean	endoplasmic reticulum	24.78	19.86
KRH29454	Soybean	nucleus	29.2	19.41
KRH51528	Soybean	nucleus	29.2	18.13
KRH60842	Soybean	mitochondrion	29.2	17.84
KRH42209	Soybean	endoplasmic reticulum	27.43	17.61
KRH38934	Soybean	plastid	23.01	16.88
KRH58335	Soybean	nucleus	27.43	14.9
KRH01278	Soybean	mitochondrion, nucleus, plastid	31.86	14.75
KRH45033	Soybean	nucleus, plastid	30.97	14.29
KRH56813	Soybean	mitochondrion	33.63	13.87
KRH03133	Soybean	nucleus	33.63	13.82
KRH40931	Soybean	mitochondrion	25.66	12.55
KRG92035	Soybean	plastid	36.28	10.51
KRG90774	Soybean	nucleus	24.78	10.04
KRH35987	Soybean	nucleus	17.7	6.92
KRH54698	Soybean	plastid	25.66	4.3

Protein Annotations

EntrezGene:100527061	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02000684	EnsemblPlantsGene:GLYMA_01G232300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1JAL8	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH77758	ProteinID:KRH77758	ProteinID:KRH77758.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45502	PANTHER:PTHR45502:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001BA8E86	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:55884101..55887224

Molecular Weight (calculated)

12679.6 Da

IEP (calculated)

10.559

GRAVY (calculated)

-0.162

Length

113 amino acids

Sequence
(BLAST)

001: MASMREFSRV ILSHLKKPHA SPSQLLFLRT MTSKVFVKGL AFSTTEEELA KAFSQYGSVL KANIILNKAK NRSKGFGYVT FAKEEEACKA QIDMNGKILH
101: GRVIYVDVQL PNK

Best Arabidopsis Sequence Match ( AT2G27330.1 )
(BLAST)

001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS

Arabidopsis Description

At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.