Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27330.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 74.26 | 72.66 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 72.79 | 71.22 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 72.79 | 71.22 |
| EES10764 | Sorghum | mitochondrion | 61.03 | 61.48 |
| Os04t0414300-00 | Rice | mitochondrion | 60.29 | 59.85 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 44.85 | 47.29 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 44.85 | 47.29 |
| KRH67959 | Soybean | mitochondrion | 44.12 | 46.15 |
| VIT_08s0007g02860.t01 | Wine grape | mitochondrion | 44.85 | 45.86 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 31.62 | 44.33 |
| KRH77758 | Soybean | mitochondrion | 35.29 | 42.48 |
| AT5G06210.1 | Thale cress | mitochondrion | 44.85 | 41.78 |
| Bra028739.1-P | Field mustard | mitochondrion | 44.85 | 41.78 |
| CDY04982 | Canola | mitochondrion | 44.85 | 41.78 |
| CDY14089 | Canola | mitochondrion | 44.85 | 41.78 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 42.65 | 41.73 |
| VIT_06s0080g00870.t01 | Wine grape | plastid | 31.62 | 38.74 |
| AT2G27330.1 | Thale cress | mitochondrion | 32.35 | 37.93 |
| CDY31170 | Canola | mitochondrion, nucleus | 30.15 | 31.06 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 22.06 | 30.3 |
| Bra000516.1-P | Field mustard | mitochondrion | 29.41 | 29.85 |
| CDX83260 | Canola | mitochondrion | 29.41 | 29.85 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 26.47 | 29.51 |
| HORVU3Hr1G093400.1 | Barley | plastid | 32.35 | 26.19 |
| HORVU4Hr1G059000.4 | Barley | plastid | 34.56 | 24.35 |
| HORVU2Hr1G042560.2 | Barley | mitochondrion | 28.68 | 23.49 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 28.68 | 22.54 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 25.74 | 21.6 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 25.74 | 15.22 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 32.35 | 15.02 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 29.41 | 13.07 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 29.41 | 12.82 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G073330.9 | EnsemblPlantsGene:HORVU2Hr1G073330 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45502 | PANTHER:PTHR45502:SF1 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B463D62 | UniProt:A0A287IFR4 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:527528855..527529521
Molecular Weight (calculated)
14980.8 Da
IEP (calculated)
7.529
GRAVY (calculated)
-0.397
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: SYNFHMKLLQ SGFDGAELLL MEQSRPKQGL SLSDTVFNRF TGLSQFATED SLAEAFTRYG QVLEATIVTD KMTSRSKGFG FVKFASEEEA NKAREEMNGK
101: VLNGRVIYVD IAKAKQDRAA DVVPIARGPP NPVGNN
101: VLNGRVIYVD IAKAKQDRAA DVVPIARGPP NPVGNN
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
101: KHNPPDTKPN HAGGDS
Arabidopsis Description
At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.