Factsheet for PGSC0003DMT400072597

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083240.1.1	Tomato	mitochondrion	97.67	97.67
KRH67959	Soybean	mitochondrion	66.67	66.15
VIT_08s0007g02860.t01	Wine grape	mitochondrion	67.44	65.41
Bra028739.1-P	Field mustard	mitochondrion	65.89	58.22
CDY04982	Canola	mitochondrion	65.89	58.22
CDY14089	Canola	mitochondrion	65.12	57.53
AT5G06210.1	Thale cress	mitochondrion	65.12	57.53
EES10764	Sorghum	mitochondrion	53.49	51.11
TraesCS2D01G294000.1	Wheat	mitochondrion	54.26	50.36
TraesCS2B01G312500.1	Wheat	mitochondrion	54.26	50.36
TraesCS2A01G296100.1	Wheat	mitochondrion	52.71	48.92
Os04t0414300-00	Rice	mitochondrion	51.94	48.91
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	47.29	44.85
PGSC0003DMT400028726	Potato	nucleus	38.76	34.25
PGSC0003DMT400053017	Potato	mitochondrion, plastid	35.66	30.26
PGSC0003DMT400049607	Potato	plastid	36.43	29.94
PGSC0003DMT400040748	Potato	mitochondrion	33.33	29.66
PGSC0003DMT400001786	Potato	nucleus	14.73	27.14
PGSC0003DMT400056141	Potato	mitochondrion	28.68	25.0
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	28.68	24.83
PGSC0003DMT400022733	Potato	plastid	31.01	24.54
PGSC0003DMT400084266	Potato	extracellular	29.46	23.6
PGSC0003DMT400084290	Potato	nucleus	28.68	22.29
PGSC0003DMT400083014	Potato	nucleus	28.68	22.29
PGSC0003DMT400084258	Potato	nucleus	28.68	22.29
PGSC0003DMT400001879	Potato	cytosol	30.23	22.16
PGSC0003DMT400064758	Potato	mitochondrion	40.31	20.72
PGSC0003DMT400076497	Potato	nucleus	28.68	18.05
PGSC0003DMT400045627	Potato	nucleus	29.46	17.76
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	35.66	17.49
PGSC0003DMT400003685	Potato	nucleus	32.56	13.86
PGSC0003DMT400043581	Potato	nucleus	27.13	12.92
PGSC0003DMT400050134	Potato	plastid	37.98	12.25
PGSC0003DMT400079815	Potato	nucleus	23.26	9.43

Protein Annotations

EntrezGene:102605902	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:1901002	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1CQM3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400028248	PGSC:PGSC0003DMG400028248
EnsemblPlants:PGSC0003DMT400072597	PFscan:PS50102	PANTHER:PTHR45502	PANTHER:PTHR45502:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294EF79	RefSeq:XP_006339140.1	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028248]

Coordinates

chr10:+:55886061..55889604

Molecular Weight (calculated)

13930.8 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.210

Length

129 amino acids

Sequence
(BLAST)

001: MAALRKLLLP KNTSVVISNS AIFLSRRGIA SKLFVGGLSF YTTEKALSEA FSQHGQVIEA KIVTDRVSDR SKGFGFVTYA SEDEAEKALQ EMNGKPLNGR
101: VVFVDYAKPK TDGGGMPIAR GPPEPPVEQ

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.