Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0094g00380.t01 | Wine grape | mitochondrion | 35.57 | 48.18 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 30.87 | 43.4 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 32.89 | 43.36 |
| CDY31588 | Canola | nucleus | 22.15 | 42.31 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 28.19 | 38.53 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 28.19 | 37.84 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 27.52 | 37.61 |
| Os01t0974701-01 | Rice | mitochondrion | 28.86 | 37.07 |
| TraesCS3B01G610900.1 | Wheat | mitochondrion | 26.85 | 36.7 |
| Zm00001d041949_P001 | Maize | mitochondrion | 26.17 | 36.11 |
| KRH24829 | Soybean | mitochondrion | 34.23 | 34.93 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 27.52 | 33.61 |
| KRH24832 | Soybean | endoplasmic reticulum | 31.54 | 33.33 |
| CDX71070 | Canola | mitochondrion | 32.89 | 32.24 |
| EES02151 | Sorghum | mitochondrion, plastid | 28.19 | 28.77 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 24.83 | 28.68 |
| PGSC0003DMT400001786 | Potato | nucleus | 12.08 | 25.71 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 24.83 | 24.34 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 22.82 | 23.45 |
| PGSC0003DMT400028726 | Potato | nucleus | 22.15 | 22.6 |
| KRH40931 | Soybean | mitochondrion | 33.56 | 21.64 |
| PGSC0003DMT400049607 | Potato | plastid | 22.15 | 21.02 |
| PGSC0003DMT400083014 | Potato | nucleus | 21.48 | 19.28 |
| PGSC0003DMT400084258 | Potato | nucleus | 21.48 | 19.28 |
| PGSC0003DMT400084290 | Potato | nucleus | 21.48 | 19.28 |
| PGSC0003DMT400084266 | Potato | extracellular | 20.13 | 18.63 |
| PGSC0003DMT400001879 | Potato | cytosol | 21.48 | 18.18 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 17.45 | 17.57 |
| PGSC0003DMT400022733 | Potato | plastid | 18.79 | 17.18 |
| PGSC0003DMT400045627 | Potato | nucleus | 23.49 | 16.36 |
| PGSC0003DMT400076497 | Potato | nucleus | 21.48 | 15.61 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 26.17 | 15.54 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 22.15 | 12.55 |
| PGSC0003DMT400003685 | Potato | nucleus | 24.16 | 11.88 |
| PGSC0003DMT400043581 | Potato | nucleus | 19.46 | 10.7 |
| PGSC0003DMT400050134 | Potato | plastid | 25.5 | 9.5 |
| PGSC0003DMT400079815 | Potato | nucleus | 16.11 | 7.55 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400070114 | EnsemblPlantsGene:PGSC0003DMG401027258 | EntrezGene:102599064 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45502 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG401027258 | SignalP:SignalP-noTM |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296AD07 | UniProt:M1CLP6 | MapMan:35.2 | : |
Description
Glycine-rich RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401027258]
Coordinates
chr4:+:10640579..10644589
Molecular Weight (calculated)
16872.6 Da
IEP (calculated)
5.668
GRAVY (calculated)
0.143
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: TILGILLLTQ NLFLSGLCYD TNEPILKQAF EQHGETIEVK VICDHKSGKS KGYGFVKFTS ETAASKALKE MDGQFLFFMF LSYWMEEIFA SVMPTKDDVE
101: RFQLSSFLIL FVDPVHIPQL FAMDSRRSMQ AFQITGILPE VKSGLLGRS
101: RFQLSSFLIL FVDPVHIPQL FAMDSRRSMQ AFQITGILPE VKSGLLGRS
001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK
101: YAQPKRSLYQ NPK
Arabidopsis Description
Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.