Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 76.92 | 53.1 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 39.74 | 29.25 |
| CDX71070 | Canola | mitochondrion | 56.41 | 28.95 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 39.74 | 28.44 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 39.74 | 28.44 |
| TraesCS3B01G610900.1 | Wheat | mitochondrion | 38.46 | 27.52 |
| VIT_05s0094g00380.t01 | Wine grape | mitochondrion | 38.46 | 27.27 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 42.31 | 27.05 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 38.46 | 27.03 |
| Os01t0974701-01 | Rice | mitochondrion | 39.74 | 26.72 |
| KRH24829 | Soybean | mitochondrion | 46.15 | 24.66 |
| EES02151 | Sorghum | mitochondrion, plastid | 43.59 | 23.29 |
| Zm00001d041949_P001 | Maize | mitochondrion | 30.77 | 22.22 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 42.31 | 22.15 |
| KRH24832 | Soybean | endoplasmic reticulum | 37.18 | 20.57 |
| CDY09244 | Canola | mitochondrion | 25.64 | 19.23 |
| CDY46213 | Canola | nucleus | 29.49 | 18.85 |
| CDY26743 | Canola | mitochondrion | 34.62 | 18.24 |
| CDY47311 | Canola | mitochondrion | 33.33 | 18.06 |
| CDY19230 | Canola | mitochondrion | 32.05 | 17.99 |
| CDY04982 | Canola | mitochondrion | 33.33 | 17.81 |
| CDY14089 | Canola | mitochondrion | 33.33 | 17.81 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 21.79 | 17.71 |
| CDY47314 | Canola | mitochondrion | 33.33 | 17.33 |
| CDY53035 | Canola | mitochondrion | 33.33 | 17.22 |
| CDY06468 | Canola | mitochondrion | 32.05 | 16.89 |
| CDY31170 | Canola | mitochondrion, nucleus | 28.21 | 16.67 |
| CDX83260 | Canola | mitochondrion | 28.21 | 16.42 |
| CDY41969 | Canola | cytosol | 26.92 | 16.41 |
| CDY08312 | Canola | mitochondrion | 32.05 | 16.34 |
| CDX82164 | Canola | mitochondrion | 29.49 | 15.86 |
| CDY51614 | Canola | mitochondrion | 28.21 | 15.17 |
| CDX74955 | Canola | plastid | 28.21 | 15.17 |
| KRH40931 | Soybean | mitochondrion | 43.59 | 14.72 |
| CDY35978 | Canola | mitochondrion, plastid | 26.92 | 14.69 |
| CDY42616 | Canola | cytosol | 29.49 | 14.65 |
| CDY28003 | Canola | plastid | 26.92 | 14.58 |
| CDX71276 | Canola | nucleus | 32.05 | 14.53 |
| CDX91368 | Canola | plastid | 26.92 | 14.48 |
| CDY43035 | Canola | plastid | 28.21 | 14.38 |
| CDY64931 | Canola | plastid | 28.21 | 14.38 |
| CDY42466 | Canola | plastid | 28.21 | 14.38 |
| CDY59763 | Canola | nucleus | 30.77 | 14.37 |
| CDY43820 | Canola | plastid | 28.21 | 14.01 |
| CDX90323 | Canola | plastid | 29.49 | 13.94 |
| CDY12133 | Canola | cytosol | 28.21 | 13.92 |
| CDY70933 | Canola | nucleus | 29.49 | 13.69 |
| CDY15876 | Canola | nucleus | 29.49 | 13.61 |
| CDY72366 | Canola | nucleus | 29.49 | 13.45 |
| CDY48990 | Canola | nucleus | 37.18 | 11.93 |
| CDX83617 | Canola | nucleus | 34.62 | 11.64 |
| CDY52166 | Canola | nucleus | 35.9 | 11.52 |
| CDY13632 | Canola | nucleus | 34.62 | 11.3 |
| CDY16825 | Canola | plastid | 37.18 | 11.03 |
| CDY65478 | Canola | endoplasmic reticulum | 26.92 | 10.1 |
| CDY42426 | Canola | mitochondrion | 28.21 | 9.09 |
| CDY49123 | Canola | mitochondrion | 30.77 | 9.02 |
| CDX73070 | Canola | mitochondrion | 30.77 | 8.89 |
| CDX87197 | Canola | plastid | 37.18 | 8.81 |
| CDX96526 | Canola | mitochondrion | 30.77 | 8.63 |
| CDY02175 | Canola | mitochondrion | 37.18 | 8.55 |
| CDY34132 | Canola | nucleus | 20.51 | 6.27 |
| CDY19589 | Canola | plastid | 29.49 | 6.17 |
| CDY06395 | Canola | nucleus | 29.49 | 5.78 |
| CDX80910 | Canola | nucleus | 15.38 | 4.6 |
| CDY11283 | Canola | nucleus | 16.67 | 4.25 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078H441 | UniProt:A0A078H441 | EnsemblPlants:CDY31588 | ProteinID:CDY31588 |
| ProteinID:CDY31588.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00047915001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6698 | SEG:seg |
Description
BnaA10g12830DBnaA10g12830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H441]
Coordinates
chrLK032274:+:453033..453509
Molecular Weight (calculated)
8703.2 Da
IEP (calculated)
5.836
GRAVY (calculated)
-0.642
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MRERNIECNE SEKYGQVINV RVICDHVSGK SKGYGFVLFD SEEAAASALA SMNNQLLEGR QIRVEYARPK GGLDQNPN
001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK
101: YAQPKRSLYQ NPK
Arabidopsis Description
Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.