CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49123	Canola	mitochondrion	91.74	83.46
CDX73070	Canola	mitochondrion	89.67	80.37
CDX96526	Canola	mitochondrion	91.74	79.86
CDX82164	Canola	mitochondrion	47.11	78.62
AT1G74230.1	Thale cress	mitochondrion, plastid	88.43	74.05
CDY51614	Canola	mitochondrion	43.8	73.1
CDY06468	Canola	mitochondrion	31.41	51.35
CDY08312	Canola	mitochondrion	31.82	50.33
CDY53035	Canola	mitochondrion	30.17	48.34
CDY47314	Canola	mitochondrion	29.75	48.0
CDY47311	Canola	mitochondrion	28.51	47.92
CDY41969	Canola	cytosol	23.14	43.75
CDY46213	Canola	nucleus	21.9	43.44
CDY16825	Canola	plastid	47.11	43.35
Solyc10g081180.1.1	Tomato	nucleus	38.02	41.82
CDY15876	Canola	nucleus	28.93	41.42
CDY19230	Canola	mitochondrion	23.55	41.01
CDY65478	Canola	endoplasmic reticulum	35.12	40.87
CDY26743	Canola	mitochondrion	24.79	40.54
CDY72366	Canola	nucleus	28.51	40.35
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	42.98	39.54
CDY42616	Canola	cytosol	25.62	39.49
CDY59763	Canola	nucleus	26.86	38.92
CDX90323	Canola	plastid	26.03	38.18
CDY70933	Canola	nucleus	26.45	38.1
CDY12133	Canola	cytosol	24.79	37.97
CDX71276	Canola	nucleus	26.03	36.63
CDY04982	Canola	mitochondrion	21.49	35.62
CDX87197	Canola	plastid	47.93	35.26
CDY02175	Canola	mitochondrion	49.17	35.1
CDY14089	Canola	mitochondrion	21.07	34.93
CDY28003	Canola	plastid	19.42	32.64
CDY09244	Canola	mitochondrion	13.64	31.73
CDY35978	Canola	mitochondrion, plastid	17.36	29.37
CDX83260	Canola	mitochondrion	15.7	28.36
CDX91368	Canola	plastid	16.94	28.28
CDX74955	Canola	plastid	16.94	28.28
CDY31588	Canola	nucleus	9.09	28.21
CDX82066	Canola	cytosol, nucleus, plastid	11.16	28.12
CDY42466	Canola	plastid	17.77	28.1
CDY31170	Canola	mitochondrion, nucleus	15.29	28.03
CDY43035	Canola	plastid	16.94	26.8
CDY64931	Canola	plastid	16.94	26.8
CDY43820	Canola	plastid	16.94	26.11
CDX71070	Canola	mitochondrion	14.46	23.03
CDX83617	Canola	nucleus	20.25	21.12
CDY13632	Canola	nucleus	20.25	20.5
CDY48990	Canola	nucleus	20.25	20.16
CDY52166	Canola	nucleus	19.83	19.75
CDY11283	Canola	nucleus	20.25	16.01
CDY34132	Canola	nucleus	16.12	15.29
CDX80910	Canola	nucleus	13.64	12.64
CDY19589	Canola	plastid	15.7	10.19
CDY06395	Canola	nucleus	15.29	9.3

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:A0A078HXF6	UniProt:A0A078HXF6	EnsemblPlants:CDY42426	ProteinID:CDY42426
ProteinID:CDY42426.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00074733001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF0965	SEG:seg

Description

BnaC02g22820DBnaC02g22820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXF6]

Coordinates

chrLK032524:-:125172..127223

Molecular Weight (calculated)

24690.8 Da

IEP (calculated)

4.479

GRAVY (calculated)

-0.513

Length

242 amino acids

Sequence
(BLAST)

001: MAFLSKVGRI FRQTSTHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA AGGGSYGGNA GAYVGNSPYG GNAGGDGYGS NFGGGYGVAG GVGGSDNFAQ GSSSSAGFDD KFSSDVPLGN
201: DTDHQLESAG DDNQFGGSEN GQSEVGPDGV DQTDDGDVAK RA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.