Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 5
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18630.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G18630.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025674.1-P | Field mustard | mitochondrion | 94.96 | 91.03 |
| CDY26743 | Canola | mitochondrion | 94.24 | 88.51 |
| AT1G18630.1 | Thale cress | mitochondrion | 76.98 | 69.03 |
| CDY46213 | Canola | nucleus | 34.53 | 39.34 |
| CDY47314 | Canola | mitochondrion | 41.73 | 38.67 |
| CDX82164 | Canola | mitochondrion | 40.29 | 38.62 |
| CDY53035 | Canola | mitochondrion | 41.73 | 38.41 |
| CDY47311 | Canola | mitochondrion | 39.57 | 38.19 |
| CDY51614 | Canola | mitochondrion | 39.57 | 37.93 |
| CDY06468 | Canola | mitochondrion | 40.29 | 37.84 |
| CDY08312 | Canola | mitochondrion | 40.29 | 36.6 |
| CDY41969 | Canola | cytosol | 32.37 | 35.16 |
| CDX74955 | Canola | plastid | 35.25 | 33.79 |
| CDX91368 | Canola | plastid | 34.53 | 33.1 |
| CDY09244 | Canola | mitochondrion | 24.46 | 32.69 |
| CDY31588 | Canola | nucleus | 17.99 | 32.05 |
| CDY42616 | Canola | cytosol | 35.97 | 31.85 |
| CDX71276 | Canola | nucleus | 38.13 | 30.81 |
| CDY70933 | Canola | nucleus | 36.69 | 30.36 |
| CDY15876 | Canola | nucleus | 36.69 | 30.18 |
| CDY59763 | Canola | nucleus | 35.97 | 29.94 |
| CDX90323 | Canola | plastid | 35.25 | 29.7 |
| CDY72366 | Canola | nucleus | 35.97 | 29.24 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 20.14 | 29.17 |
| CDY12133 | Canola | cytosol | 33.09 | 29.11 |
| CDY04982 | Canola | mitochondrion | 28.78 | 27.4 |
| CDY14089 | Canola | mitochondrion | 27.34 | 26.03 |
| CDY42466 | Canola | plastid | 27.34 | 24.84 |
| CDY35978 | Canola | mitochondrion, plastid | 25.18 | 24.48 |
| CDY28003 | Canola | plastid | 25.18 | 24.31 |
| CDY43035 | Canola | plastid | 26.62 | 24.18 |
| CDY65478 | Canola | endoplasmic reticulum | 35.97 | 24.04 |
| CDY43820 | Canola | plastid | 26.62 | 23.57 |
| CDY42426 | Canola | mitochondrion | 41.01 | 23.55 |
| CDY64931 | Canola | plastid | 25.9 | 23.53 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 42.45 | 22.43 |
| Solyc10g081180.1.1 | Tomato | nucleus | 35.25 | 22.27 |
| CDX73070 | Canola | mitochondrion | 43.17 | 22.22 |
| CDY16825 | Canola | plastid | 41.73 | 22.05 |
| CDY49123 | Canola | mitochondrion | 41.73 | 21.8 |
| CDX71070 | Canola | mitochondrion | 23.74 | 21.71 |
| CDX83260 | Canola | mitochondrion | 20.86 | 21.64 |
| CDX96526 | Canola | mitochondrion | 43.17 | 21.58 |
| CDY31170 | Canola | mitochondrion, nucleus | 20.14 | 21.21 |
| CDX83617 | Canola | nucleus | 32.37 | 19.4 |
| CDY48990 | Canola | nucleus | 33.81 | 19.34 |
| CDY52166 | Canola | nucleus | 33.09 | 18.93 |
| CDY13632 | Canola | nucleus | 32.37 | 18.83 |
| CDX87197 | Canola | plastid | 42.45 | 17.93 |
| CDY02175 | Canola | mitochondrion | 42.45 | 17.4 |
| CDY11283 | Canola | nucleus | 31.65 | 14.38 |
| CDY34132 | Canola | nucleus | 20.86 | 11.37 |
| CDX80910 | Canola | nucleus | 20.86 | 11.11 |
| CDY19589 | Canola | plastid | 25.18 | 9.38 |
| CDY06395 | Canola | nucleus | 24.46 | 8.54 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FXV2 | UniProt:A0A078FXV2 | EnsemblPlants:CDY19230 | ProteinID:CDY19230 |
| ProteinID:CDY19230.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00006533001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45040 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EECC5E | SEG:seg |
Description
BnaC05g14310DBnaC05g14310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXV2]
Coordinates
chrLK032093:+:379703..380582
Molecular Weight (calculated)
14784.6 Da
IEP (calculated)
9.997
GRAVY (calculated)
-0.173
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MHYMDLFSKA GNIFRQPRAL QSANAMLQGN LSLTPSKLFV GGLSSTTDVD ILRDVFGRFG KIVDVVVISD RETGVSKGFG FVTYDSIDAA TKAMQQMNDQ
101: ELDGRIIGVN PADSGGSGGG LARRGGRGGF GRGGYNFVR
101: ELDGRIIGVN PADSGGSGGG LARRGGRGGF GRGGYNFVR
001: MHYMGLFSRA GNIFRQPRAL QASNAMLQGN LSLTPSKIFV GGLSPSTDVE LLKEAFGSFG KIVDAVVVLD RESGLSRGFG FVTYDSIEVA NNAMQAMQNK
101: ELDGRIIGVH PADSGGGGGG GGFARRGGYG GGRGGYARGG FGRGGFGGGG YGFVR
101: ELDGRIIGVH PADSGGGGGG GGFARRGGYG GGRGGYARGG FGRGGFGGGG YGFVR
Arabidopsis Description
RBG6GR-RBP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WQQ6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.