Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005189.1-P | Field mustard | plastid | 97.24 | 97.92 |
| CDX91368 | Canola | plastid | 95.86 | 95.86 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 68.28 | 70.71 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 80.0 | 69.46 |
| KRG95817 | Soybean | mitochondrion | 60.69 | 63.31 |
| KRH67547 | Soybean | mitochondrion | 59.31 | 61.87 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 57.93 | 60.87 |
| PGSC0003DMT400028726 | Potato | nucleus | 54.48 | 54.11 |
| EER92461 | Sorghum | plastid | 60.69 | 52.07 |
| TraesCS4B01G204600.1 | Wheat | plastid | 61.38 | 52.05 |
| Zm00001d028661_P001 | Maize | plastid | 59.31 | 51.81 |
| TraesCS4D01G205500.1 | Wheat | plastid | 61.38 | 51.74 |
| TraesCS4A01G099700.1 | Wheat | plastid | 61.38 | 51.74 |
| Os03t0278800-00 | Rice | plastid | 60.0 | 50.29 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 58.62 | 48.3 |
| HORVU4Hr1G059000.4 | Barley | plastid | 60.69 | 45.6 |
| CDY42466 | Canola | plastid | 42.07 | 39.87 |
| CDY43035 | Canola | plastid | 41.38 | 39.22 |
| CDY64931 | Canola | plastid | 41.38 | 39.22 |
| CDY43820 | Canola | plastid | 42.07 | 38.85 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 24.83 | 37.5 |
| CDY09244 | Canola | mitochondrion | 25.52 | 35.58 |
| CDY19230 | Canola | mitochondrion | 33.79 | 35.25 |
| CDY06468 | Canola | mitochondrion | 34.48 | 33.78 |
| CDY47311 | Canola | mitochondrion | 33.1 | 33.33 |
| CDY26743 | Canola | mitochondrion | 33.79 | 33.11 |
| CDY08312 | Canola | mitochondrion | 34.48 | 32.68 |
| CDY14089 | Canola | mitochondrion | 32.41 | 32.19 |
| CDY04982 | Canola | mitochondrion | 32.41 | 32.19 |
| CDY47314 | Canola | mitochondrion | 33.1 | 32.0 |
| CDY53035 | Canola | mitochondrion | 33.1 | 31.79 |
| CDY46213 | Canola | nucleus | 25.52 | 30.33 |
| CDY41969 | Canola | cytosol | 26.21 | 29.69 |
| CDY31588 | Canola | nucleus | 15.17 | 28.21 |
| CDY15876 | Canola | nucleus | 31.03 | 26.63 |
| CDY72366 | Canola | nucleus | 31.03 | 26.32 |
| CDX82164 | Canola | mitochondrion | 26.21 | 26.21 |
| CDY28003 | Canola | plastid | 25.52 | 25.69 |
| CDY51614 | Canola | mitochondrion | 25.52 | 25.52 |
| CDY42616 | Canola | cytosol | 26.9 | 24.84 |
| CDY35978 | Canola | mitochondrion, plastid | 24.14 | 24.48 |
| CDY70933 | Canola | nucleus | 28.28 | 24.4 |
| CDY12133 | Canola | cytosol | 26.21 | 24.05 |
| CDY59763 | Canola | nucleus | 27.59 | 23.95 |
| CDX90323 | Canola | plastid | 26.21 | 23.03 |
| CDY31170 | Canola | mitochondrion, nucleus | 20.69 | 22.73 |
| CDX83260 | Canola | mitochondrion | 20.69 | 22.39 |
| CDX71276 | Canola | nucleus | 26.21 | 22.09 |
| CDX71070 | Canola | mitochondrion | 20.0 | 19.08 |
| CDY65478 | Canola | endoplasmic reticulum | 24.83 | 17.31 |
| CDY42426 | Canola | mitochondrion | 28.28 | 16.94 |
| CDY49123 | Canola | mitochondrion | 29.66 | 16.17 |
| CDY16825 | Canola | plastid | 28.28 | 15.59 |
| CDX73070 | Canola | mitochondrion | 28.28 | 15.19 |
| CDX83617 | Canola | nucleus | 24.14 | 15.09 |
| CDY48990 | Canola | nucleus | 24.83 | 14.81 |
| CDX96526 | Canola | mitochondrion | 28.28 | 14.75 |
| CDY13632 | Canola | nucleus | 24.14 | 14.64 |
| CDY52166 | Canola | nucleus | 24.14 | 14.4 |
| CDX87197 | Canola | plastid | 27.59 | 12.16 |
| CDY02175 | Canola | mitochondrion | 28.28 | 12.09 |
| CDY19589 | Canola | plastid | 28.97 | 11.26 |
| CDY11283 | Canola | nucleus | 22.07 | 10.46 |
| CDY06395 | Canola | nucleus | 28.28 | 10.3 |
| CDY34132 | Canola | nucleus | 14.48 | 8.24 |
| CDX80910 | Canola | nucleus | 12.41 | 6.9 |
Protein Annotations
| EnsemblPlants:CDX74955 | EnsemblPlantsGene:GSBRNA2T00116962001 | Gene3D:3.30.70.330 | GO:A0A078CDJ2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45392 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX74955 | ProteinID:CDX74955.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEF478 | MapMan:35.1 | : | : |
Description
BnaA05g07010D
Coordinates
chrLK031802:+:1637097..1637940
Molecular Weight (calculated)
15957.8 Da
IEP (calculated)
10.160
GRAVY (calculated)
-0.383
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFVSTFRRI LAGSNNSLSS SSFSLVHHCS TLSSPKLFVS GLSRLTTNEK LQDAFAPFGE LVDARVITDR ETGRSKGFGF VTYATIQDAE KAKEGMNAKF
101: LDGWVIFVDP ARPREPRRPL HQDHQPQSSS SGSGFTTNKT IGWCK
101: LDGWVIFVDP ARPREPRRPL HQDHQPQSSS SGSGFTTNKT IGWCK
001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.