CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012986.1-P	Field mustard	mitochondrion	84.07	93.44
CDY16825	Canola	plastid	67.26	86.69
AT5G61030.1	Thale cress	mitochondrion	67.85	74.43
CDX87197	Canola	plastid	70.21	72.34
VIT_17s0000g07330.t01	Wine grape	plastid	43.95	53.79
GSMUA_Achr9P07090_001	Banana	mitochondrion	36.87	52.52
EES16016	Sorghum	mitochondrion	38.05	51.6
CDY06468	Canola	mitochondrion	22.42	51.35
CDX73070	Canola	mitochondrion	40.71	51.11
CDX82164	Canola	mitochondrion	21.83	51.03
CDY53035	Canola	mitochondrion	22.71	50.99
CDY47311	Canola	mitochondrion	21.53	50.69
CDY47314	Canola	mitochondrion	22.42	50.67
CDY49123	Canola	mitochondrion	39.53	50.38
CDX96526	Canola	mitochondrion	41.3	50.36
CDY08312	Canola	mitochondrion	22.71	50.33
Os12t0502200-01	Rice	mitochondrion	38.05	50.0
GSMUA_Achr4P03230_001	Banana	mitochondrion	37.76	50.0
TraesCS3D01G424100.1	Wheat	mitochondrion	32.15	49.77
TraesCS3A01G428400.1	Wheat	mitochondrion	33.04	49.56
CDY42426	Canola	mitochondrion	35.1	49.17
CDY15876	Canola	nucleus	24.48	49.11
CDY51614	Canola	mitochondrion	20.94	48.97
CDY72366	Canola	nucleus	24.19	47.95
TraesCS3B01G465800.1	Wheat	mitochondrion	32.45	47.62
KRH03133	Soybean	nucleus	37.76	46.55
KRH56813	Soybean	mitochondrion	37.17	45.99
Zm00001d041750_P001	Maize	mitochondrion	35.4	45.98
CDY59763	Canola	nucleus	22.42	45.51
Solyc02g066930.2.1	Tomato	nucleus	28.91	45.37
CDY26743	Canola	mitochondrion	19.76	45.27
CDY42616	Canola	cytosol	20.94	45.22
PGSC0003DMT400064758	Potato	mitochondrion	33.33	45.02
CDX90323	Canola	plastid	21.83	44.85
CDY70933	Canola	nucleus	22.12	44.64
CDY41969	Canola	cytosol	16.22	42.97
Zm00001d023734_P003	Maize	nucleus, plastid	36.28	42.86
HORVU3Hr1G094330.2	Barley	mitochondrion	38.64	42.81
CDY19230	Canola	mitochondrion	17.4	42.45
CDY12133	Canola	cytosol	19.76	42.41
TraesCS5A01G460900.1	Wheat	mitochondrion	38.05	42.3
TraesCS5D01G473100.1	Wheat	mitochondrion	38.05	42.16
TraesCS5B01G470700.1	Wheat	mitochondrion	38.05	42.02
Os07t0602600-01	Rice	mitochondrion	29.5	42.02
CDX71276	Canola	nucleus	21.24	41.86
HORVU5Hr1G110370.1	Barley	mitochondrion	35.99	41.64
Os10t0321700-01	Rice	mitochondrion	38.05	40.69
CDY46213	Canola	nucleus	14.45	40.16
PGSC0003DMT400003685	Potato	nucleus	34.81	38.94
TraesCS2D01G184200.1	Wheat	mitochondrion	37.17	38.77
TraesCS2B01G203200.1	Wheat	mitochondrion	36.28	38.56
Zm00001d022065_P001	Maize	mitochondrion	34.51	37.99
KXG36643	Sorghum	mitochondrion	35.1	37.66
CDY31588	Canola	nucleus	8.55	37.18
Solyc02g088790.2.1	Tomato	extracellular, plastid	39.82	36.19
CDY28003	Canola	plastid	14.45	34.03
CDY09244	Canola	mitochondrion	10.03	32.69
CDY35978	Canola	mitochondrion, plastid	13.27	31.47
CDY04982	Canola	mitochondrion	12.98	30.14
CDY65478	Canola	endoplasmic reticulum	18.29	29.81
CDY14089	Canola	mitochondrion	12.68	29.45
CDX83260	Canola	mitochondrion	11.5	29.1
CDY31170	Canola	mitochondrion, nucleus	11.21	28.79
CDX91368	Canola	plastid	12.09	28.28
CDX74955	Canola	plastid	12.09	28.28
CDY42466	Canola	plastid	11.8	26.14
CDY48990	Canola	nucleus	18.29	25.51
CDX83617	Canola	nucleus	17.4	25.43
CDY13632	Canola	nucleus	17.7	25.1
CDY52166	Canola	nucleus	17.99	25.1
CDX82066	Canola	cytosol, nucleus, plastid	7.08	25.0
CDY43035	Canola	plastid	11.21	24.84
CDY64931	Canola	plastid	11.21	24.84
CDX71070	Canola	mitochondrion	10.91	24.34
CDY43820	Canola	plastid	11.21	24.2
KRH54698	Soybean	plastid	38.94	19.58
CDY11283	Canola	nucleus	17.11	18.95
CDY34132	Canola	nucleus	13.86	18.43
CDX80910	Canola	nucleus	13.57	17.62
TraesCS2A01G176700.1	Wheat	mitochondrion	35.1	16.23
CDY19589	Canola	plastid	10.91	9.92
CDY06395	Canola	nucleus	10.91	9.3

Protein Annotations

EnsemblPlants:CDY02175	EnsemblPlantsGene:GSBRNA2T00113580001	Gene3D:3.30.70.330	GO:A0A078EJD7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	ncoils:Coil	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY02175	ProteinID:CDY02175.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE5DB1	MapMan:16.12.5.2	:

Description

BnaA03g39920D

Coordinates

chrLK031932:-:514988..516706

Molecular Weight (calculated)

34197.1 Da

IEP (calculated)

7.477

GRAVY (calculated)

-0.508

Length

339 amino acids

Sequence
(BLAST)

001: MKTIHVFYIN FRSLCFRRSR LGFKQKRSIT EEAKQSVERE RERYLKAMAF LSKFGNILKQ TNARGSLSTG PSLFQAIRCM SSSKLFIGGM EYGMNEDSLR
101: EAFSKYGEVV ETRVILDRET GRSRGFGFVT FTSTEAASSA IQALDGQDLH GRIVKVNYAH DRTSGGGYGG GGGGGGYGGG GGYGGGGGGY GGGAGGYGSG
201: TGGYGGGASG GYGGGYGASG GYGSSGSGYG EGASAGAVGG YNGSNGYGEG STASAGDVGG YNGSSGYATG NAYGSNNGGF AGESQVGGNP VGNSSQFGGD
301: NTQFGVGGEA QFGSSMEKPE MINGPVGDFE DDTDVAKRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.