Factsheet for Os10t0321700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
nucleus: 26035336
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G473100.1	Wheat	mitochondrion	60.88	63.07
TraesCS5B01G470700.1	Wheat	mitochondrion	60.57	62.54
TraesCS5A01G460900.1	Wheat	mitochondrion	59.94	62.3
HORVU5Hr1G110370.1	Barley	mitochondrion	56.47	61.09
GSMUA_Achr9P07090_001	Banana	mitochondrion	41.64	55.46
Os12t0502200-01	Rice	mitochondrion	43.22	53.1
VIT_17s0000g07330.t01	Wine grape	plastid	45.74	52.35
GSMUA_Achr4P03230_001	Banana	mitochondrion	41.96	51.95
Os01t0916600-01	Rice	mitochondrion	23.03	48.67
Os07t0602600-01	Rice	mitochondrion	35.33	47.06
CDY16825	Canola	plastid	38.49	46.39
Bra035944.1-P	Field mustard	plastid	38.17	46.01
KRH01278	Soybean	mitochondrion, nucleus, plastid	35.02	45.49
Os01t0502800-01	Rice	mitochondrion	7.57	45.28
Os12t0632000-01	Rice	nucleus	23.03	45.06
KRH03133	Soybean	nucleus	38.8	44.73
Solyc02g066930.2.1	Tomato	nucleus	29.97	43.98
Bra012986.1-P	Field mustard	mitochondrion	41.32	42.95
KRH56813	Soybean	mitochondrion	36.91	42.7
KRH45033	Soybean	nucleus, plastid	32.81	42.45
PGSC0003DMT400064758	Potato	mitochondrion	32.49	41.04
AT5G61030.1	Thale cress	mitochondrion	38.49	39.48
CDY02175	Canola	mitochondrion	40.69	38.05
PGSC0003DMT400003685	Potato	nucleus	36.28	37.95
CDX87197	Canola	plastid	38.17	36.78
Os08t0139000-02	Rice	mitochondrion	16.09	36.17
Os07t0549800-01	Rice	mitochondrion	14.2	33.83
Os03t0836200-03	Rice	nucleus	21.77	33.66
Os01t0974701-01	Rice	mitochondrion	11.99	32.76
Os03t0670700-01	Rice	nucleus	20.19	32.65
Solyc02g088790.2.1	Tomato	extracellular, plastid	37.85	32.17
Os04t0414300-00	Rice	mitochondrion	12.3	28.47
Os03t0278800-00	Rice	plastid	14.2	26.01
Os03t0681900-01	Rice	nucleus	21.14	21.75
KRH54698	Soybean	plastid	36.59	17.21
Os04t0583800-01	Rice	plastid	5.36	14.41
Os02t0730800-01	Rice	plastid	9.46	7.52

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:4348309	ProteinID:ABG66004.1	ProteinID:BAF26255.1	ProteinID:BAT10312.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os10g0321700	EnsemblPlants:Os10t0321700-01	PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102
PANTHER:PTHR44202	PANTHER:PTHR44202:SF2	UniProt:Q109W0	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0000DB4B7F	RefSeq:XP_015614820.1	RefSeq:XP_015614821.1	SEG:seg	:

Description

Similar to Ribonucleoprotein like protein. (Os10t0321700-01)

Coordinates

chr10:-:8786980..8796460

Molecular Weight (calculated)

32246.0 Da

IEP (calculated)

4.363

GRAVY (calculated)

-0.769

Length

317 amino acids

Sequence
(BLAST)

001: MAFLRKVGNL VRQSAGSGSP LFQAVRCMSS SKLFIGGISY GTDDQSLKEA FANYGEVIEA RVIVDRTTGR SRGFGFVTYT STDEAAAAIT GMDGKDLQGR
101: IVRVSYAHDR GSRAGGYGGG GYSGQGTYGG GGGYGGGGYG GQDAYGGRGV GGYSEGGRGY VGGGYGDGNN YGGYNTSGGY NSEGGRGGYS VFEGGHGYGS
201: GGTGYTGGSG GYNSAPGNYS SDNFNQGGAA PGAYEGANYG GGNNYMNNAT SDDSTGKLDE LLNDLKVDGD GKEDGEGKAD GAGLVNEDLK GDDGQDELLQ
301: NDFKDEDVSD DYANKRR

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.