Factsheet for TraesCS5D01G473100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G470700.1	Wheat	mitochondrion	95.75	95.44
TraesCS5A01G460900.1	Wheat	mitochondrion	94.12	94.43
HORVU5Hr1G110370.1	Barley	mitochondrion	87.58	91.47
Os10t0321700-01	Rice	mitochondrion	63.07	60.88
GSMUA_Achr9P07090_001	Banana	mitochondrion	42.48	54.62
TraesCS3D01G417800.1	Wheat	plastid	30.07	52.27
TraesCS3D01G424100.1	Wheat	mitochondrion	35.62	49.77
GSMUA_Achr4P03230_001	Banana	mitochondrion	41.5	49.61
TraesCS4D01G018500.1	Wheat	nucleus	26.8	49.4
VIT_17s0000g07330.t01	Wine grape	plastid	43.79	48.38
CDY16825	Canola	plastid	41.18	47.91
TraesCS6D01G199100.1	Wheat	nucleus	24.18	47.74
Bra035944.1-P	Field mustard	plastid	40.52	47.15
TraesCS5D01G020900.1	Wheat	plastid	26.8	47.13
Solyc02g066930.2.1	Tomato	nucleus	32.03	45.37
KRH01278	Soybean	mitochondrion, nucleus, plastid	35.95	45.08
Bra012986.1-P	Field mustard	mitochondrion	43.46	43.61
PGSC0003DMT400064758	Potato	mitochondrion	35.62	43.43
KRH03133	Soybean	nucleus	38.89	43.27
TraesCS2D01G184200.1	Wheat	mitochondrion	44.44	41.85
KRH56813	Soybean	mitochondrion	37.25	41.61
KRH45033	Soybean	nucleus, plastid	32.68	40.82
AT5G61030.1	Thale cress	mitochondrion	40.2	39.81
CDX87197	Canola	plastid	41.83	38.91
CDY02175	Canola	mitochondrion	42.16	38.05
PGSC0003DMT400003685	Potato	nucleus	34.64	34.98
TraesCS2D01G217900.1	Wheat	mitochondrion	15.69	34.29
TraesCS4D01G205200.1	Wheat	mitochondrion	11.44	33.65
TraesCS2D01G294000.1	Wheat	mitochondrion	14.38	31.65
Solyc02g088790.2.1	Tomato	extracellular, plastid	38.24	31.37
TraesCS5D01G516500.1	Wheat	nucleus	22.22	30.63
TraesCS7D01G323600.1	Wheat	nucleus	22.55	30.0
TraesCS3D01G539400.1	Wheat	mitochondrion	10.46	29.36
TraesCS4D01G205500.1	Wheat	plastid	15.36	27.33
TraesCS4D01G023800.2	Wheat	nucleus	24.51	23.58
TraesCS2D01G238900.1	Wheat	nucleus	21.24	22.18
KRH54698	Soybean	plastid	39.87	18.1
TraesCS6D01G273200.1	Wheat	plastid	12.42	9.74

Protein Annotations

EnsemblPlants:TraesCS5D01G473100.1	EnsemblPlantsGene:TraesCS5D01G473100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44202
PANTHER:PTHR44202:SF2	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	MapMan:16.12.5.2	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:513511672..513516205

Molecular Weight (calculated)

30051.7 Da

IEP (calculated)

4.313

GRAVY (calculated)

-0.648

Length

306 amino acids

Sequence
(BLAST)

001: MAFLQKVGNA LKRSAGSGSA MLQAVRSMSS SKVFVGGISY GTDDQSLADA FSNYGQVVES KVIMDRESGR SRGFGFVTYT SAEEAGAAIT GMDGKDLQGR
101: IVRVSYAHDR GSRPSFGGGG GYGGGGGGGY GGGDGGYGGG SCGGGGGYSG GGGYGGGGRG GGYNSGGSYN SGYNSGGNYG APQGGQGGYG GDAGFTGVGG
201: GGYNAAPANN YGGNSLNQGG GAPPAFGGGN YGAGNDSYAN DTPVDLPPGK LDDLLKDLKF DVGGKEDGAG EDAGLVDADT KRSEGQDDLL DDDFSKDEDD
301: YANKRS

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.