CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56813	Soybean	mitochondrion	88.36	88.69
KRG97345	Soybean	mitochondrion	28.36	55.32
VIT_17s0000g07330.t01	Wine grape	plastid	50.91	50.54
Os12t0502200-01	Rice	mitochondrion	46.91	50.0
GSMUA_Achr4P03230_001	Banana	mitochondrion	45.82	49.22
TraesCS3A01G428400.1	Wheat	mitochondrion	40.36	49.12
TraesCS3D01G424100.1	Wheat	mitochondrion	38.91	48.86
EES16016	Sorghum	mitochondrion	44.0	48.4
TraesCS3B01G465800.1	Wheat	mitochondrion	39.64	47.19
KRH29451	Soybean	nucleus	29.09	46.78
KRH01278	Soybean	mitochondrion, nucleus, plastid	41.45	46.72
GSMUA_Achr9P07090_001	Banana	mitochondrion	39.64	45.8
KRH31570	Soybean	mitochondrion	24.0	45.52
KRH45033	Soybean	nucleus, plastid	40.36	45.31
CDY16825	Canola	plastid	43.27	45.25
Bra035944.1-P	Field mustard	plastid	43.27	45.25
Zm00001d041750_P001	Maize	mitochondrion	42.55	44.83
KRH29452	Soybean	nucleus	25.09	44.23
KRH51528	Soybean	nucleus	29.09	43.96
KRH60842	Soybean	mitochondrion	29.45	43.78
Os07t0602600-01	Rice	mitochondrion	37.82	43.7
AT5G61030.1	Thale cress	mitochondrion	49.09	43.69
KRH29453	Soybean	nucleus	22.18	43.57
KRH29454	Soybean	nucleus	26.18	42.35
Bra012986.1-P	Field mustard	mitochondrion	46.55	41.97
Zm00001d023734_P003	Maize	nucleus, plastid	42.91	41.12
TraesCS5D01G473100.1	Wheat	mitochondrion	43.27	38.89
Os10t0321700-01	Rice	mitochondrion	44.73	38.8
TraesCS5B01G470700.1	Wheat	mitochondrion	43.27	38.76
HORVU5Hr1G110370.1	Barley	mitochondrion	41.09	38.57
TraesCS5A01G460900.1	Wheat	mitochondrion	42.55	38.36
HORVU3Hr1G094330.2	Barley	mitochondrion	42.18	37.91
CDY02175	Canola	mitochondrion	46.55	37.76
KRH23034	Soybean	mitochondrion	11.64	37.21
Zm00001d022065_P001	Maize	mitochondrion	41.45	37.01
TraesCS2D01G184200.1	Wheat	mitochondrion	43.64	36.92
TraesCS2B01G203200.1	Wheat	mitochondrion	42.18	36.36
CDX87197	Canola	plastid	43.27	36.17
KXG36643	Sorghum	mitochondrion	41.09	35.76
KRH67959	Soybean	mitochondrion	16.73	35.38
KRH10291	Soybean	nucleus	9.45	35.14
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	12.0	34.02
KRH77758	Soybean	mitochondrion	13.82	33.63
KRH17905	Soybean	cytosol, mitochondrion, nucleus	9.82	32.53
KRH50325	Soybean	vacuole	16.0	31.43
KRH67547	Soybean	mitochondrion	15.64	30.94
KRG95817	Soybean	mitochondrion	15.27	30.22
KRH25927	Soybean	mitochondrion, plastid	15.64	29.66
KRH42209	Soybean	endoplasmic reticulum	18.55	28.98
KRH55574	Soybean	mitochondrion, plastid	14.91	28.28
KRH58335	Soybean	nucleus	20.73	27.4
KRH24829	Soybean	mitochondrion	12.73	23.97
KRG90774	Soybean	nucleus	24.0	23.66
KRH24832	Soybean	endoplasmic reticulum	11.64	22.7
KRH09475	Soybean	plastid	14.55	22.22
KRH35987	Soybean	nucleus	21.82	20.76
KRH54698	Soybean	plastid	50.55	20.62
KRH38934	Soybean	plastid	9.09	16.23
KRH40931	Soybean	mitochondrion	13.45	16.02
TraesCS2A01G176700.1	Wheat	mitochondrion	41.45	15.55
KRG92035	Soybean	plastid	13.82	9.74

Protein Annotations

EntrezGene:100799124	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02010335	EMBL:BT097885	UniProt:C6TJN7
EnsemblPlantsGene:GLYMA_17G078400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH03133	ProteinID:KRH03133	ProteinID:KRH03133.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0001B167D9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6118030..6121227

Molecular Weight (calculated)

28079.4 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.677

Length

275 amino acids

Sequence
(BLAST)

001: MAFFGRIGNL LRQTASRQVS SKLRSPPSFF QAIRCMSSAP STKLFIGGVS YSTDEQSLRE AFSKYGEVVD ARIIMDRETG RSRGFGFITY TSVEEASSAI
101: QALDGQDLHG RPIRVNYANE RPRGYGGGGG GFGSYGAVGG GGYEGGGGSG YRGNVSDGYG GGNYSRNDGG GYGYGAGSYG SGGNYGDSGP GNNYSGGYSG
201: SNSGHFGDAG SVGNHESSTG FAGNGYDGSV VDGGVGAGSE FGSSGQLDSK TSSNGDEGFG DYRDDNDADN FAKRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.