Factsheet for Zm00001d022065_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36643	Sorghum	mitochondrion	80.84	78.8
Os07t0602600-01	Rice	mitochondrion	39.29	50.84
Zm00001d031168_P001	Maize	plastid	25.0	49.68
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	25.32	49.06
Zm00001d041246_P001	Maize	nucleus	23.05	48.97
Zm00001d012052_P001	Maize	mitochondrion, plastid	24.68	48.72
GSMUA_Achr4P03230_001	Banana	mitochondrion	39.94	48.05
Zm00001d041750_P001	Maize	mitochondrion	39.94	47.13
GSMUA_Achr9P07090_001	Banana	mitochondrion	36.04	46.64
TraesCS2B01G203200.1	Wheat	mitochondrion	48.05	46.4
Solyc02g066930.2.1	Tomato	nucleus	32.14	45.83
TraesCS2D01G184200.1	Wheat	mitochondrion	48.05	45.54
Zm00001d023734_P003	Maize	nucleus, plastid	41.23	44.25
PGSC0003DMT400064758	Potato	mitochondrion	34.74	42.63
VIT_17s0000g07330.t01	Wine grape	plastid	38.31	42.6
CDY16825	Canola	plastid	36.04	42.21
Bra035944.1-P	Field mustard	plastid	35.71	41.83
KRH03133	Soybean	nucleus	37.01	41.45
KRH56813	Soybean	mitochondrion	36.04	40.51
Bra012986.1-P	Field mustard	mitochondrion	39.94	40.33
AT5G61030.1	Thale cress	mitochondrion	38.64	38.51
KRH01278	Soybean	mitochondrion, nucleus, plastid	29.22	36.89
PGSC0003DMT400003685	Potato	nucleus	35.06	35.64
KRH45033	Soybean	nucleus, plastid	28.25	35.51
CDY02175	Canola	mitochondrion	37.99	34.51
CDX87197	Canola	plastid	35.71	33.43
Zm00001d024675_P001	Maize	mitochondrion	14.61	32.14
Zm00001d034768_P005	Maize	nucleus	21.1	31.71
Solyc02g088790.2.1	Tomato	extracellular, plastid	38.31	31.64
Zm00001d041949_P001	Maize	mitochondrion	11.04	31.48
Zm00001d006566_P002	Maize	mitochondrion	11.69	31.3
Zm00001d026016_P002	Maize	plastid	13.64	28.0
Zm00001d028661_P001	Maize	plastid	14.94	27.71
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	24.03	24.92
Zm00001d019041_P001	Maize	extracellular, plasma membrane	23.38	24.57
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	24.35	24.12
Zm00001d007799_P001	Maize	mitochondrion, plastid	23.38	18.75
TraesCS2A01G176700.1	Wheat	mitochondrion	44.48	18.69
KRH54698	Soybean	plastid	38.31	17.51
Zm00001d017930_P003	Maize	plastid	12.34	9.25

Protein Annotations

EntrezGene:100191295	MapMan:16.12.5.2	Gene3D:3.30.70.330	UniProt:B4F8A7	EMBL:BT033345	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONM59445.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B635C	EnsemblPlantsGene:Zm00001d022065	EnsemblPlants:Zm00001d022065_P001	EnsemblPlants:Zm00001d022065_T001
SEG:seg	:	:	:	:	:

Description

Glycine-rich RNA-binding protein 3 mitochondrial

Coordinates

chr7:-:169202866..169205554

Molecular Weight (calculated)

30113.8 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.480

Length

308 amino acids

Sequence
(BLAST)

001: MAFASRIGNA LRRTLAPTCS PLLQPVRCMS SSKLFVGGLS FATDETTLKD AFSEFGNVLE ARIIIDRESG RSRGFGFITF TSTEEASAAM TSMDGKELQG
101: RNIRVNHANE RAGGIRGGGG FGAGGGYGGG GGYPTGGYGG GGYSSGGGGG YSSGGGGGYS SGGYAANGYG VGSGSGYGGT YSNASGGGYS GSDGYGNGAA
201: SGGYANNLSS GYNSNGRYNT IGSSDGNTGG YNSSPNPYGV GNYNTGGSSS SGGTLGEFGG GGFGGNNFAG NVTGGFSGGG ASYGANKPQY NGDDDLLGEG
301: FFDKEVAE

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.