Factsheet for Zm00001d006566_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97356	Sorghum	plastid	60.87	53.44
Os07t0549800-01	Rice	mitochondrion	58.26	50.38
TraesCS2B01G237100.1	Wheat	mitochondrion	57.39	47.48
TraesCS2A01G212000.1	Wheat	mitochondrion	56.52	46.43
TraesCS2D01G217900.1	Wheat	mitochondrion	56.52	46.43
Zm00001d024675_P001	Maize	mitochondrion	47.83	39.29
HORVU2Hr1G042560.2	Barley	mitochondrion	55.65	38.55
Solyc06g035610.2.1	Tomato	mitochondrion	35.65	28.47
PGSC0003DMT400056141	Potato	mitochondrion	35.65	27.7
Zm00001d041949_P001	Maize	mitochondrion	25.22	26.85
Zm00001d028661_P001	Maize	plastid	38.26	26.51
Zm00001d012052_P001	Maize	mitochondrion, plastid	33.91	25.0
Zm00001d026016_P002	Maize	plastid	29.57	22.67
Zm00001d041246_P001	Maize	nucleus	26.96	21.38
Zm00001d031168_P001	Maize	plastid	26.96	20.0
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	26.09	18.87
Zm00001d034768_P005	Maize	nucleus	30.43	17.07
Zm00001d041750_P001	Maize	mitochondrion	32.17	14.18
Zm00001d023734_P003	Maize	nucleus, plastid	32.17	12.89
Zm00001d022065_P001	Maize	mitochondrion	31.3	11.69
Zm00001d019041_P001	Maize	extracellular, plasma membrane	25.22	9.9
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	23.48	9.09
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	23.48	8.68
Zm00001d007799_P001	Maize	mitochondrion, plastid	25.22	7.55
Zm00001d017930_P003	Maize	plastid	24.35	6.81

Protein Annotations

EnsemblPlants:Zm00001d006566_P002	EnsemblPlants:Zm00001d006566_T002	EnsemblPlantsGene:Zm00001d006566	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR15241	PANTHER:PTHR15241:SF8	PFAM:PF00076	PFscan:PS50102	ProteinID:ONM24252.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008459D03	UniProt:A0A1D6EXU0	MapMan:35.1	:

Description

ELAV-like protein 4

Coordinates

chr2:+:211038725..211040522

Molecular Weight (calculated)

12741.2 Da

IEP (calculated)

9.982

GRAVY (calculated)

-0.536

Length

115 amino acids

Sequence
(BLAST)

001: MRCLDKGSHT ASSGNKPNAL NVNPRGLNKR TTSEGLKEAF SKFGQVIEAR VITDRISGYS RGFGFVKYAT VQEAGEAIKG MDGKFLDSWV IFAETPHNHH
101: NKEHQLMIEV AIHGR

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.