Factsheet for PGSC0003DMT400056141

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035610.2.1	Tomato	mitochondrion	88.51	90.97
PGSC0003DMT400049607	Potato	plastid	51.35	48.41
TraesCS2D01G217900.1	Wheat	mitochondrion	43.24	45.71
TraesCS2A01G212000.1	Wheat	mitochondrion	43.24	45.71
TraesCS2B01G237100.1	Wheat	mitochondrion	42.57	45.32
Os07t0549800-01	Rice	mitochondrion	38.51	42.86
EER97356	Sorghum	plastid	37.84	42.75
HORVU2Hr1G042560.2	Barley	mitochondrion	42.57	37.95
Zm00001d006566_P002	Maize	mitochondrion	27.7	35.65
PGSC0003DMT400028726	Potato	nucleus	29.73	30.14
PGSC0003DMT400072597	Potato	mitochondrion	25.0	28.68
PGSC0003DMT400022733	Potato	plastid	28.38	25.77
PGSC0003DMT400040748	Potato	mitochondrion	23.65	24.14
PGSC0003DMT400053017	Potato	mitochondrion, plastid	24.32	23.68
PGSC0003DMT400001786	Potato	nucleus	10.14	21.43
PGSC0003DMT400084266	Potato	extracellular	20.27	18.63
PGSC0003DMT400083014	Potato	nucleus	20.27	18.07
PGSC0003DMT400084258	Potato	nucleus	20.27	18.07
PGSC0003DMT400084290	Potato	nucleus	20.27	18.07
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	17.57	17.45
PGSC0003DMT400001879	Potato	cytosol	20.27	17.05
PGSC0003DMT400064758	Potato	mitochondrion	28.38	16.73
PGSC0003DMT400076497	Potato	nucleus	20.27	14.63
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	25.68	14.45
PGSC0003DMT400045627	Potato	nucleus	19.59	13.55
PGSC0003DMT400003685	Potato	nucleus	24.32	11.88
PGSC0003DMT400043581	Potato	nucleus	18.92	10.33
PGSC0003DMT400050134	Potato	plastid	25.68	9.5
PGSC0003DMT400079815	Potato	nucleus	17.57	8.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400056141	EnsemblPlantsGene:PGSC0003DMG400021811	EntrezGene:102583170	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400021811	RefSeq:XP_006363508.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296A31E	UniProt:M1BZ11	MapMan:35.1	:

Description

Nucleolin [Source:PGSC_GENE;Acc:PGSC0003DMG400021811]

Coordinates

chr12:-:8031647..8033167

Molecular Weight (calculated)

15982.0 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.107

Length

148 amino acids

Sequence
(BLAST)

001: MALRAAAAGR IPVAPRGLRA VFYSFSANVP LYQPRTRPPP EPSTNLYVSG LSRHTTSESL RNAFAEYGEV LDARVLTDGI TGYSTCCGYV RYQTMEESAA
101: GLEAMDGQFL DGLVIVAEYA KPKPRHLALE DDYPAGGYGL ASVLDMSI

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.