Factsheet for PGSC0003DMT400022733

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011210.2.1	Tomato	plastid	73.62	90.91
CDX82066	Canola	cytosol, nucleus, plastid	37.42	63.54
Bra008100.1-P	Field mustard	cytosol	26.38	52.44
GSMUA_Achr5P15860_001	Banana	plastid	50.31	48.24
KRH09475	Soybean	plastid	50.31	45.56
Zm00001d026016_P002	Maize	plastid	41.1	44.67
KXG26990	Sorghum	plastid	39.26	43.54
VIT_17s0053g00760.t01	Wine grape	plastid	41.1	42.14
KRH38934	Soybean	plastid	37.42	39.61
AT1G73530.1	Thale cress	plastid	41.1	37.02
PGSC0003DMT400028726	Potato	nucleus	28.22	31.51
PGSC0003DMT400072597	Potato	mitochondrion	24.54	31.01
PGSC0003DMT400049607	Potato	plastid	28.83	29.94
PGSC0003DMT400001786	Potato	nucleus	12.27	28.57
PGSC0003DMT400056141	Potato	mitochondrion	25.77	28.38
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	44.17	28.02
Os04t0583800-01	Rice	plastid	19.02	26.27
PGSC0003DMT400053017	Potato	mitochondrion, plastid	21.47	23.03
PGSC0003DMT400040748	Potato	mitochondrion	19.63	22.07
PGSC0003DMT400084266	Potato	extracellular	20.25	20.5
PGSC0003DMT400001879	Potato	cytosol	21.47	19.89
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	17.18	18.79
PGSC0003DMT400083014	Potato	nucleus	19.02	18.67
PGSC0003DMT400084258	Potato	nucleus	19.02	18.67
PGSC0003DMT400084290	Potato	nucleus	19.02	18.67
PGSC0003DMT400076497	Potato	nucleus	19.02	15.12
PGSC0003DMT400064758	Potato	mitochondrion	22.7	14.74
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	22.09	13.69
PGSC0003DMT400045627	Potato	nucleus	17.18	13.08
PGSC0003DMT400003685	Potato	nucleus	21.47	11.55
PGSC0003DMT400050134	Potato	plastid	28.22	11.5
PGSC0003DMT400043581	Potato	nucleus	19.02	11.44
PGSC0003DMT400079815	Potato	nucleus	15.95	8.18

Protein Annotations

EntrezGene:102594620	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016554
GO:GO:1900871	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1AH51	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400008817	PGSC:PGSC0003DMG400008817	EnsemblPlants:PGSC0003DMT400022733	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002966516	RefSeq:XP_006340998.1	SEG:seg

Description

RNA recognition motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008817]

Coordinates

chr9:+:1381774..1384238

Molecular Weight (calculated)

18088.7 Da

IEP (calculated)

10.649

GRAVY (calculated)

-0.244

Length

163 amino acids

Sequence
(BLAST)

001: MAGIVMAAAY PGATLFAKSQ LPLSSFSIRK ESKHLLLSQS VTIRYAQIIV SASYTQSSSS GTPVNFNSST KLFVSGLSFR TTEESLRKAF NNFGELVEVN
101: LMMDKIANRP RGFAFIRYAT EEESQKAIEG MHGKFLDGRV IFVEVAKSRS ELRRGPNHNN SRQ

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.