Factsheet for PGSC0003DMT400040748

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053780.2.1	Tomato	mitochondrion	97.24	87.58
PGSC0003DMT400053017	Potato	mitochondrion, plastid	76.55	73.03
AT3G23830.1	Thale cress	mitochondrion, plastid	60.69	64.71
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	64.83	61.84
CDY47311	Canola	mitochondrion	61.38	61.81
Bra013997.1-P	Field mustard	mitochondrion	61.38	61.38
CDY06468	Canola	mitochondrion	61.38	60.14
Bra037056.1-P	Field mustard	mitochondrion	61.38	59.33
CDY47314	Canola	mitochondrion	61.38	59.33
CDY53035	Canola	mitochondrion	61.38	58.94
CDY08312	Canola	mitochondrion	61.38	58.17
KRG97345	Soybean	mitochondrion	56.55	58.16
AT4G13850.1	Thale cress	mitochondrion	62.76	57.59
GSMUA_Achr7P02750_001	Banana	mitochondrion	57.93	56.0
KRH31570	Soybean	mitochondrion	51.03	51.03
GSMUA_Achr4P16080_001	Banana	mitochondrion	59.31	45.26
Bra014000.1-P	Field mustard	mitochondrion	61.38	40.09
PGSC0003DMT400001786	Potato	nucleus	17.93	37.14
PGSC0003DMT400084290	Potato	nucleus	40.69	35.54
PGSC0003DMT400084258	Potato	nucleus	40.69	35.54
PGSC0003DMT400083014	Potato	nucleus	40.69	35.54
PGSC0003DMT400084266	Potato	extracellular	39.31	35.4
PGSC0003DMT400072597	Potato	mitochondrion	29.66	33.33
PGSC0003DMT400001879	Potato	cytosol	39.31	32.39
PGSC0003DMT400064758	Potato	mitochondrion	50.34	29.08
PGSC0003DMT400028726	Potato	nucleus	27.59	27.4
PGSC0003DMT400049607	Potato	plastid	29.66	27.39
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	49.66	27.38
PGSC0003DMT400076497	Potato	nucleus	33.79	23.9
PGSC0003DMT400056141	Potato	mitochondrion	24.14	23.65
PGSC0003DMT400045627	Potato	nucleus	33.79	22.9
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	23.45	22.82
PGSC0003DMT400003685	Potato	nucleus	44.83	21.45
PGSC0003DMT400022733	Potato	plastid	22.07	19.63
PGSC0003DMT400043581	Potato	nucleus	33.79	18.08
PGSC0003DMT400079815	Potato	nucleus	28.28	12.89
PGSC0003DMT400050134	Potato	plastid	23.45	8.5

Protein Annotations

EntrezGene:102581514	MapMan:16.12.5.2	MapMan:16.7.2	Gene3D:3.30.70.330	ProteinID:ABA40453	ProteinID:ABA40453.1
ProteinID:ABA40461	ProteinID:ABA40461.1	EMBL:DQ191652	EMBL:DQ191660	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BAC2	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400015754	PGSC:PGSC0003DMG400015754	EnsemblPlants:PGSC0003DMT400040748	PFscan:PS50102	PANTHER:PTHR44202
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296391E	RefSeq:XP_006365467.1
SEG:seg	:	:	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015754]

Coordinates

chr5:+:49198694..49201840

Molecular Weight (calculated)

15397.0 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.444

Length

145 amino acids

Sequence
(BLAST)

001: MAFCNKLGGL LRQSISTGNA VSANSPTPAM LNAIRCMSSR LFVGGLSWGT DDQSLKEAFT SFGDVVDAKV IIDRDSGRSR GFGFVNFSDE DCAKEAMNAM
101: DGQQLHGRNI RVNLAQERAP RSDRYGGGGG YGGGYGGQAR DNDGF

Best Arabidopsis Sequence Match ( AT4G13850.1 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.