Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045627 | Potato | nucleus | 80.0 | 76.64 |
| KRH42209 | Soybean | endoplasmic reticulum | 60.0 | 69.89 |
| KXG37189 | Sorghum | nucleus | 67.32 | 69.35 |
| Os03t0836200-03 | Rice | nucleus | 68.78 | 68.78 |
| Zm00001d034768_P005 | Maize | nucleus | 67.8 | 67.8 |
| KRH58335 | Soybean | nucleus | 67.8 | 66.83 |
| Solyc01g104840.2.1 | Tomato | nucleus | 71.22 | 65.47 |
| KXG24163 | Sorghum | nucleus | 67.32 | 63.3 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 64.39 | 62.56 |
| Bra025205.1-P | Field mustard | nucleus | 70.24 | 62.07 |
| CDX83617 | Canola | nucleus | 69.76 | 61.64 |
| CDY48990 | Canola | nucleus | 71.71 | 60.49 |
| Bra032933.1-P | Field mustard | nucleus | 71.71 | 60.49 |
| CDY13632 | Canola | nucleus | 70.24 | 60.25 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 64.88 | 59.91 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 63.9 | 59.82 |
| CDY52166 | Canola | nucleus | 69.76 | 58.85 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 65.37 | 58.26 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 65.37 | 58.26 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 65.37 | 58.26 |
| AT3G26420.1 | Thale cress | nucleus | 67.8 | 56.73 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 65.37 | 56.54 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 74.63 | 53.68 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 36.1 | 44.05 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 66.34 | 43.59 |
| PGSC0003DMT400083014 | Potato | nucleus | 33.66 | 41.57 |
| PGSC0003DMT400084290 | Potato | nucleus | 33.66 | 41.57 |
| PGSC0003DMT400084258 | Potato | nucleus | 33.66 | 41.57 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 41.46 | 41.46 |
| PGSC0003DMT400084266 | Potato | extracellular | 32.2 | 40.99 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 38.05 | 40.84 |
| PGSC0003DMT400001879 | Potato | cytosol | 34.15 | 39.77 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 23.9 | 33.79 |
| PGSC0003DMT400001786 | Potato | nucleus | 11.22 | 32.86 |
| PGSC0003DMT400043581 | Potato | nucleus | 42.93 | 32.47 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 22.93 | 30.92 |
| PGSC0003DMT400028726 | Potato | nucleus | 21.46 | 30.14 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 18.05 | 28.68 |
| PGSC0003DMT400079815 | Potato | nucleus | 41.46 | 26.73 |
| PGSC0003DMT400049607 | Potato | plastid | 19.51 | 25.48 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 31.22 | 24.33 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 27.8 | 22.71 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 15.61 | 21.48 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 14.63 | 20.27 |
| PGSC0003DMT400003685 | Potato | nucleus | 28.78 | 19.47 |
| PGSC0003DMT400022733 | Potato | plastid | 15.12 | 19.02 |
| PGSC0003DMT400050134 | Potato | plastid | 17.07 | 8.75 |
Protein Annotations
| EntrezGene:102592243 | MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 |
| UniProt:M1CWV3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | EnsemblPlantsGene:PGSC0003DMG400029743 | PGSC:PGSC0003DMG400029743 |
| EnsemblPlants:PGSC0003DMT400076497 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000295D584 | RefSeq:XP_006351815.1 |
| RefSeq:XP_006351816.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
RNA-binding protein RZ-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029743]
Coordinates
chr1:-:81597702..81601426
Molecular Weight (calculated)
22235.1 Da
IEP (calculated)
8.311
GRAVY (calculated)
-1.356
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEDEYRCF IGNLSWSTSD RGLKDAFEKF GHLVDAKVVL DKFSGRSRGF GFVTFDEKRA MEDAIEAMNG MDLDGRAITV DKAQPQQGSG RDFDSDRPRD
101: RDRDRGRDRD RDRGSRDYGG GRGSGGGGGG GGDCYNCGKP GHFARECPSE GGRGGRSGGG GGPDRNGDRY GSRSSRDGGG REGGERFNRD RSGPYDRRSS
201: GGYRN
101: RDRDRGRDRD RDRGSRDYGG GRGSGGGGGG GGDCYNCGKP GHFARECPSE GGRGGRSGGG GGPDRNGDRY GSRSSRDGGG REGGERFNRD RSGPYDRRSS
201: GGYRN
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.