CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37189	Sorghum	nucleus	69.27	75.88
TraesCS7D01G323600.1	Wheat	nucleus	79.82	75.65
TraesCS7B01G227500.2	Wheat	nucleus	79.82	75.65
HORVU7Hr1G078140.5	Barley	nucleus	79.82	75.65
TraesCS7A01G326800.1	Wheat	nucleus	79.82	73.42
PGSC0003DMT400076497	Potato	nucleus	63.3	67.32
KRH42209	Soybean	endoplasmic reticulum	54.13	67.05
KRH58335	Soybean	nucleus	63.76	66.83
PGSC0003DMT400045627	Potato	nucleus	61.47	62.62
Bra025205.1-P	Field mustard	nucleus	61.47	57.76
CDX83617	Canola	nucleus	61.01	57.33
Solyc10g047130.1.1	Tomato	nucleus	62.84	57.32
CDY13632	Canola	nucleus	61.47	56.07
Bra032933.1-P	Field mustard	nucleus	62.39	55.97
CDY48990	Canola	nucleus	62.39	55.97
CDY52166	Canola	nucleus	62.39	55.97
AT3G26420.1	Thale cress	nucleus	58.72	52.24
VIT_18s0166g00180.t01	Wine grape	mitochondrion	65.6	50.18
Solyc01g104840.2.1	Tomato	nucleus	49.54	48.43
EES16438	Sorghum	nucleus	31.65	41.82
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	32.11	41.67
KXG37870	Sorghum	nucleus	31.65	40.59
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	34.86	39.79
KXG36665	Sorghum	mitochondrion	16.05	33.33
EER97356	Sorghum	plastid	19.27	32.06
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	9.17	30.77
EES01954	Sorghum	plastid	20.64	30.61
EES14515	Sorghum	plastid	19.27	30.0
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	9.17	29.85
OQU88590	Sorghum	nucleus	40.37	29.24
EES10764	Sorghum	mitochondrion	17.43	28.15
KXG37841	Sorghum	nucleus	38.99	26.9
KXG26990	Sorghum	plastid	16.05	23.81
EES16016	Sorghum	mitochondrion	26.15	22.8
EER92461	Sorghum	plastid	17.43	22.49
EES02151	Sorghum	mitochondrion, plastid	14.22	21.23
KXG36643	Sorghum	mitochondrion	25.69	17.72
KXG30823	Sorghum	plastid	15.14	8.23

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1B6PEQ0	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
EnsemblPlants:KXG24163	ProteinID:KXG24163	ProteinID:KXG24163.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OQU79746.1	ProteinID:OQU79747.1
ProteinID:OQU79748.1	ProteinID:OQU79749.1	ProteinID:OQU79750.1	ProteinID:OQU79751.1	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	EnsemblPlantsGene:SORBI_3007G002200	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0001C80C65	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:222740..225189

Molecular Weight (calculated)

23849.8 Da

IEP (calculated)

8.570

GRAVY (calculated)

-1.338

Length

218 amino acids

Sequence
(BLAST)

001: MSDVDEFRCF VGSLSWSTTE ADLKDAFRKF GHLTEAKVVL DKFSGRSRGF GFVTFDDKKS MEEAIEAMNG MDLDGRNITV ERAQAQSSGS RDRDGDRDYS
101: RGGGDRDRYR GDYSRGRDHG RDFGGGRGGG GGDCFKCGKP GHFARECPSD DGGRGDRYGS RDDKYGGSNG SSRYGPDRGG DRYSGSRDGG SRNGGGSDRY
201: NRDKSGPYER PSRGGYKY

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.