Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 58.93 | 51.83 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 63.1 | 51.71 |
| KRH42209 | Soybean | endoplasmic reticulum | 42.26 | 40.34 |
| PGSC0003DMT400076497 | Potato | nucleus | 44.05 | 36.1 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 28.57 | 36.09 |
| KXG37189 | Sorghum | nucleus | 41.07 | 34.67 |
| Zm00001d034768_P005 | Maize | nucleus | 42.26 | 34.63 |
| Os03t0836200-03 | Rice | nucleus | 42.26 | 34.63 |
| KRH58335 | Soybean | nucleus | 42.86 | 34.62 |
| PGSC0003DMT400045627 | Potato | nucleus | 42.86 | 33.64 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 41.67 | 33.18 |
| KXG24163 | Sorghum | nucleus | 41.67 | 32.11 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 41.07 | 31.51 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 42.86 | 31.3 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 42.86 | 31.3 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 42.86 | 31.3 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 41.07 | 31.08 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 28.57 | 30.97 |
| Solyc10g047130.1.1 | Tomato | nucleus | 43.45 | 30.54 |
| Solyc01g104840.2.1 | Tomato | nucleus | 40.48 | 30.49 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 42.26 | 29.96 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 27.98 | 29.75 |
| Bra025205.1-P | Field mustard | nucleus | 41.07 | 29.74 |
| CDX83617 | Canola | nucleus | 41.07 | 29.74 |
| CDY13632 | Canola | nucleus | 41.67 | 29.29 |
| Bra032933.1-P | Field mustard | nucleus | 41.67 | 28.81 |
| CDY48990 | Canola | nucleus | 41.67 | 28.81 |
| CDY52166 | Canola | nucleus | 41.67 | 28.81 |
| GSMUA_Achr11P... | Banana | mitochondrion | 18.45 | 28.7 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 19.64 | 28.7 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 28.57 | 28.24 |
| AT3G26420.1 | Thale cress | nucleus | 39.29 | 26.94 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 22.02 | 26.62 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 44.64 | 26.32 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.24 | 25.76 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 16.67 | 25.45 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 22.62 | 25.33 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 20.24 | 25.19 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 14.88 | 23.58 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 42.26 | 22.76 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 23.81 | 21.05 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 20.24 | 19.32 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 25.6 | 19.2 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 18.45 | 18.24 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 23.81 | 16.81 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 23.81 | 15.62 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 28.57 | 15.43 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 29.17 | 14.2 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 18.45 | 9.94 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr5G26170_001 | EnsemblPlants:GSMUA_Achr5P26170_001 | EnsemblPlants:GSMUA_Achr5T26170_001 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0T1U2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix |
| UniParc:UPI0002963979 | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G26170_001]
Coordinates
chr5:-:27043210..27047816
Molecular Weight (calculated)
18174.3 Da
IEP (calculated)
3.769
GRAVY (calculated)
0.587
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEIEEYRCF IGSLSWSTTD EDLKEAFQKF GQITEAKIVV DKFSGRSRGF GFVTFDDKGA MEEAIEAMNG MDLDGRSILI DLVGVVVILV VVDEVQIVVI
101: VLNVASLVIL LGNALLVMVQ EGMGMVAEMT GMGVIVITVI DPDHMNALVE AATDPDPIAA YDPVMELV
101: VLNVASLVIL LGNALLVMVQ EGMGMVAEMT GMGVIVITVI DPDHMNALVE AATDPDPIAA YDPVMELV
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.