Factsheet for GSMUA_Achr6P34250_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0502800-01	Rice	mitochondrion	34.55	71.7
KXG36665	Sorghum	mitochondrion	56.36	59.05
TraesCS4D01G205200.1	Wheat	mitochondrion	50.91	53.85
TraesCS4B01G204300.1	Wheat	mitochondrion	51.82	53.77
TraesCS4A01G100000.1	Wheat	mitochondrion	50.0	52.88
VIT_06s0004g04260.t01	Wine grape	mitochondrion	48.18	50.0
KRH23034	Soybean	mitochondrion	39.09	50.0
KRH10291	Soybean	nucleus	33.64	50.0
AT3G46020.1	Thale cress	mitochondrion	44.55	48.04
CDY09244	Canola	mitochondrion	44.55	47.12
Bra020279.1-P	Field mustard	mitochondrion	44.55	44.55
GSMUA_Achr11P...	Banana	mitochondrion	30.0	30.56
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	30.91	29.57
AT5G59860.1	Thale cress	nucleus	40.91	28.66
GSMUA_Achr6P35640_001	Banana	nucleus	35.45	28.06
GSMUA_Achr2P19090_001	Banana	mitochondrion	26.36	27.36
GSMUA_Achr7P02750_001	Banana	mitochondrion	37.27	27.33
GSMUA_Achr8P07380_001	Banana	mitochondrion	32.73	26.67
GSMUA_Achr5P15860_001	Banana	plastid	37.27	24.12
GSMUA_Achr11P...	Banana	mitochondrion	27.27	22.73
GSMUA_Achr4P16080_001	Banana	mitochondrion	36.36	21.05
GSMUA_Achr7P27650_001	Banana	nucleus	25.45	21.05
GSMUA_Achr6P15340_001	Banana	plastid	33.64	21.02
GSMUA_Achr8P05200_001	Banana	cytosol	27.27	19.35
GSMUA_Achr4P14550_001	Banana	nucleus	27.27	18.99
GSMUA_Achr9P07090_001	Banana	mitochondrion	37.27	17.23
GSMUA_Achr3P30570_001	Banana	plasma membrane	26.36	17.06
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	25.45	16.67
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	25.45	14.66
GSMUA_Achr4P03230_001	Banana	mitochondrion	33.64	14.45
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	26.36	14.15
GSMUA_Achr2P12550_001	Banana	nucleus	28.18	13.84
GSMUA_Achr2P01230_001	Banana	nucleus	29.09	10.26
GSMUA_Achr4P22370_001	Banana	nucleus	28.18	9.97
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	30.91	9.86

Protein Annotations

EnsemblPlants:GSMUA_Achr6P34250_001	EnsemblPlants:GSMUA_Achr6T34250_001	EnsemblPlantsGene:GSMUA_Achr6G34250_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000296597F	UniProt:M0TCL8	MapMan:35.2	:	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G34250_001]

Coordinates

chr6:-:32979342..32983013

Molecular Weight (calculated)

12881.2 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.572

Length

110 amino acids

Sequence
(BLAST)

001: MWSTAIWRRF ILPERGLCFR RDFSSTIYVS RLSYYTSDED FENMFSRFGR VEEARLIRDA RTNRPKGFGF VTYASDAEAE KAIKSMDGRI YGGRLIFVEY
101: AKSGSQEDKT

Best Arabidopsis Sequence Match ( AT3G46020.1 )
(BLAST)

001: MAKRISAQLF VSRLSAYTTD QSLRQLFSPF GQIKEARLIR DSETQRPKGF GFITFDSEDD ARKALKSLDG KIVDGRLIFV EVAKNAEEVR AGINSNKAED
101: RG

Arabidopsis Description

At3g46020 [Source:UniProtKB/TrEMBL;Acc:Q9LZT1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.