Factsheet for GSMUA_Achr2P01230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92035	Soybean	plastid	66.03	52.82
Os02t0730800-01	Rice	plastid	66.99	52.38
VIT_13s0106g00500.t01	Wine grape	plastid	68.59	52.32
Bra031244.1-P	Field mustard	plastid	61.54	51.47
CDY19589	Canola	plastid	61.22	51.21
KXG30823	Sorghum	plastid	65.38	50.87
Solyc11g007160.1.1	Tomato	plastid	65.06	50.75
TraesCS6B01G322400.1	Wheat	plastid	62.82	50.52
TraesCS6A01G292000.1	Wheat	plastid	62.82	50.52
TraesCS6D01G273200.1	Wheat	plastid	62.82	50.26
PGSC0003DMT400050134	Potato	plastid	64.42	50.25
AT3G20930.2	Thale cress	plastid	59.29	48.81
CDY06395	Canola	nucleus	60.9	47.74
Zm00001d017930_P003	Maize	plastid	60.26	45.74
GSMUA_Achr6P35640_001	Banana	nucleus	15.06	33.81
GSMUA_Achr2P19090_001	Banana	mitochondrion	11.22	33.02
GSMUA_Achr8P07380_001	Banana	mitochondrion	13.46	31.11
GSMUA_Achr6P34250_001	Banana	mitochondrion	10.26	29.09
GSMUA_Achr5P15860_001	Banana	plastid	15.38	28.24
GSMUA_Achr6P15340_001	Banana	plastid	15.71	27.84
GSMUA_Achr11P...	Banana	mitochondrion	9.62	27.78
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	9.94	26.96
GSMUA_Achr7P02750_001	Banana	mitochondrion	12.82	26.67
GSMUA_Achr11P...	Banana	mitochondrion	10.9	25.76
GSMUA_Achr7P27650_001	Banana	nucleus	10.9	25.56
GSMUA_Achr4P14550_001	Banana	nucleus	10.9	21.52
GSMUA_Achr8P05200_001	Banana	cytosol	10.58	21.29
GSMUA_Achr4P16080_001	Banana	mitochondrion	12.82	21.05
GSMUA_Achr3P30570_001	Banana	plasma membrane	10.9	20.0
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	9.94	18.45
GSMUA_Achr9P07090_001	Banana	mitochondrion	12.82	16.81
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	10.26	16.75
GSMUA_Achr4P03230_001	Banana	mitochondrion	12.82	15.62
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	10.26	15.61
GSMUA_Achr2P12550_001	Banana	nucleus	9.29	12.95
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	11.54	10.43
GSMUA_Achr4P22370_001	Banana	nucleus	9.94	9.97

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	EnsemblPlantsGene:GSMUA_Achr2G01230_001
EnsemblPlants:GSMUA_Achr2P01230_001	EnsemblPlants:GSMUA_Achr2T01230_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0S464	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029490C8	SEG:seg	:	:

Description

RNA recognition motif family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G01230_001]

Coordinates

chr2:+:6816996..6826761

Molecular Weight (calculated)

35135.3 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.558

Length

312 amino acids

Sequence
(BLAST)

001: MERPPGGGSS KPEVIDYYVE TLASVLGSEK EAQMCIYDAS WRSQYGFCCD IDEESSRELA RMPGVLSVRP DTNEGYGKKN YSYLDQLPAD QMKTDGHTRI
101: FPSSIGKNEH WLVRIEKPGV EVVTKAQMVD YYAQTLTKVL GNEKDAQVCI YHISWEKDFG FCCHIDEEYA RELADVPGVL SVQPDMNFES ENKNYNGNDP
201: DLSETNEVQK IRTKRLFVTG LSFYTSEKTL RAAFEGFGEL VEVKIIMDKI SKRSKGYAFI EYTTEEAASA ALKEMNGKII NGWMIVVDVA RTNPPKYSRG
301: HPRPSSSSVS SN

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.