Factsheet for VIT_13s0106g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01230_001	Banana	nucleus	52.32	68.59
KRG92035	Soybean	plastid	60.15	63.08
PGSC0003DMT400050134	Potato	plastid	58.44	59.75
Solyc11g007160.1.1	Tomato	plastid	58.44	59.75
Bra031244.1-P	Field mustard	plastid	51.83	56.84
CDY19589	Canola	plastid	51.34	56.3
AT3G20930.2	Thale cress	plastid	50.37	54.35
CDY06395	Canola	nucleus	52.08	53.52
TraesCS6A01G292000.1	Wheat	plastid	48.9	51.55
TraesCS6B01G322400.1	Wheat	plastid	48.9	51.55
Os02t0730800-01	Rice	plastid	50.12	51.38
TraesCS6D01G273200.1	Wheat	plastid	48.41	50.77
KXG30823	Sorghum	plastid	49.39	50.37
Zm00001d017930_P003	Maize	plastid	46.21	45.99
VIT_06s0080g00870.t01	Wine grape	plastid	11.98	44.14
VIT_08s0007g02860.t01	Wine grape	mitochondrion	12.71	39.1
VIT_05s0094g00380.t01	Wine grape	mitochondrion	9.29	34.55
VIT_06s0004g04260.t01	Wine grape	mitochondrion	8.8	33.96
VIT_08s0040g03330.t01	Wine grape	plastid	11.49	33.57
VIT_17s0053g00760.t01	Wine grape	plastid	11.25	28.93
VIT_19s0014g04770.t01	Wine grape	mitochondrion	9.54	28.89
VIT_12s0059g01210.t01	Wine grape	mitochondrion	9.05	26.43
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	9.29	25.0
VIT_08s0007g00070.t01	Wine grape	mitochondrion	7.58	23.31
VIT_03s0063g02610.t01	Wine grape	nucleus	7.58	19.14
VIT_18s0166g00180.t01	Wine grape	mitochondrion	10.02	14.39
VIT_08s0007g04870.t01	Wine grape	cytosol	7.58	12.5
VIT_17s0000g07330.t01	Wine grape	plastid	8.31	12.27
VIT_13s0019g05080.t01	Wine grape	nucleus	6.85	10.07

Protein Annotations

EntrezGene:100265361	wikigene:100265361	MapMan:16.12.5.2	Gene3D:3.30.70.330	ProteinID:CCB58759	ProteinID:CCB58759.1
UniProt:F6HVP6	EMBL:FN596257	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	InterPro:IPR000504
InterPro:IPR012677	EntrezGene:LOC100265361	wikigene:LOC100265361	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00015CC627	ArrayExpress:VIT_13s0106g00500	EnsemblPlantsGene:VIT_13s0106g00500	EnsemblPlants:VIT_13s0106g00500.t01	unigene:Vvi.17407	RefSeq:XP_002264164
RefSeq:XP_002264164.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:10138366..10145712

Molecular Weight (calculated)

45055.1 Da

IEP (calculated)

5.512

GRAVY (calculated)

-0.300

Length

409 amino acids

Sequence
(BLAST)

001: METLCPSATT FNITRKFSHK IQSQASSLFH TTLAFPSPFK NNYNNNLLNL SYSSSCSISC VSSSSSTATN AVSASTTSTS LAFSASAGER QRHWMVQMEA
101: PPQVLRSKAE IIDYYVRTLE TVLGSEKDAQ MCIYDASWDA PFGFCCDIDA ETSRELSGLQ GVLSVKPDPN FNSVKKDYTF SNIQLGSVSN SDIGSPQLFP
201: AGNSKYWLVQ MDRPTVGVVT KAQMVDFYAQ ILTKVLGNEK DAQMCIYHIS WQSDFGFCCE LDEECARELA GVPGVLSVRP DENFESNNKD YGGGSLQNST
301: DSLDSMEANQ PTNIKTKKLF VTGLSFYTSE KTLRGAFEGF GELVEVKIIM DKISKRSKGY AFIEYTTEEA ASAALKEMNG KIINGWMIVV DVAKPTPQKY
401: SRSRPRPAV

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.