Factsheet for VIT_08s0007g02860.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072597	Potato	mitochondrion	65.41	67.44
KRH67959	Soybean	mitochondrion	65.41	66.92
Solyc10g083240.1.1	Tomato	mitochondrion	63.16	65.12
Bra028739.1-P	Field mustard	mitochondrion	65.41	59.59
CDY04982	Canola	mitochondrion	65.41	59.59
CDY14089	Canola	mitochondrion	65.41	59.59
AT5G06210.1	Thale cress	mitochondrion	65.41	59.59
VIT_06s0080g00870.t01	Wine grape	plastid	48.12	57.66
EES10764	Sorghum	mitochondrion	53.38	52.59
TraesCS2D01G294000.1	Wheat	mitochondrion	54.89	52.52
TraesCS2B01G312500.1	Wheat	mitochondrion	54.14	51.8
TraesCS2A01G296100.1	Wheat	mitochondrion	53.38	51.08
Os04t0414300-00	Rice	mitochondrion	51.13	49.63
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	45.86	44.85
VIT_19s0014g04770.t01	Wine grape	mitochondrion	40.6	40.0
VIT_08s0040g03330.t01	Wine grape	plastid	42.11	40.0
VIT_06s0004g04260.t01	Wine grape	mitochondrion	30.83	38.68
VIT_05s0094g00380.t01	Wine grape	mitochondrion	29.32	35.45
VIT_12s0059g01210.t01	Wine grape	mitochondrion	34.59	32.86
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	36.09	31.58
VIT_08s0007g00070.t01	Wine grape	mitochondrion	30.08	30.08
VIT_17s0053g00760.t01	Wine grape	plastid	29.32	24.53
VIT_03s0063g02610.t01	Wine grape	nucleus	28.57	23.46
VIT_17s0000g07330.t01	Wine grape	plastid	39.1	18.77
VIT_08s0007g04870.t01	Wine grape	cytosol	27.07	14.52
VIT_18s0166g00180.t01	Wine grape	mitochondrion	30.83	14.39
VIT_13s0106g00500.t01	Wine grape	plastid	39.1	12.71
VIT_13s0019g05080.t01	Wine grape	nucleus	24.81	11.87

Protein Annotations

EntrezGene:100247739	wikigene:100247739	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI30340	ProteinID:CBI30340.3
UniProt:D7TJB4	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:1901002	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100247739	wikigene:LOC100247739	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502
PANTHER:PTHR45502:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001BE399F
ArrayExpress:VIT_08s0007g02860	EnsemblPlantsGene:VIT_08s0007g02860	EnsemblPlants:VIT_08s0007g02860.t01	unigene:Vvi.1989	unigene:Vvi.25532	RefSeq:XP_002276063
RefSeq:XP_002276063.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:16919541..16922250

Molecular Weight (calculated)

14469.4 Da

IEP (calculated)

8.725

GRAVY (calculated)

-0.194

Length

133 amino acids

Sequence
(BLAST)

001: MAAFARIGRR NLTNLSPSFL LPPALLICCR GIASKLFVGG LSFYTTEKGL SEHFSQYGQV VEAKIVMDRV SDRSKGFGFV TFASEEEAQK ARTEMDGKEL
101: NGRTIFVDYA KPRADFGGGM PIARGPPEPT ADS

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.