Factsheet for VIT_13s0019g05080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g01060.t01
VIT_13s0019g05080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	VIT_13s0019g01060.t01	AT3G55460.1	21798944
AT5G04280.1	VIT_13s0019g05080.t01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90774	Soybean	nucleus	79.5	79.21
PGSC0003DMT400043581	Potato	nucleus	69.42	71.22
KRH35987	Soybean	nucleus	70.86	68.17
GSMUA_Achr2P12550_001	Banana	nucleus	51.8	64.29
Solyc03g071560.2.1	Tomato	nucleus	69.78	61.78
GSMUA_Achr4P22370_001	Banana	nucleus	67.27	60.13
PGSC0003DMT400079815	Potato	nucleus	66.55	58.18
Bra005798.1-P	Field mustard	nucleus	64.03	58.17
CDY11283	Canola	nucleus	64.03	58.17
AT1G60650.2	Thale cress	nucleus	60.43	57.53
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	63.67	57.1
VIT_08s0007g04870.t01	Wine grape	cytosol	50.72	56.85
CDX80910	Canola	nucleus	52.88	56.32
Solyc11g008210.1.1	Tomato	nucleus	59.71	56.27
CDY34132	Canola	nucleus	50.72	55.29
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	58.99	55.22
TraesCS2B01G259400.1	Wheat	nucleus	56.83	53.92
TraesCS2D01G238900.1	Wheat	nucleus	56.47	53.58
KXG37841	Sorghum	nucleus	60.79	53.48
TraesCS2A01G237400.1	Wheat	nucleus	56.12	53.24
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	58.99	52.73
OQU88590	Sorghum	nucleus	56.83	52.49
VIT_03s0063g02610.t01	Wine grape	nucleus	30.58	52.47
Os03t0681900-01	Rice	nucleus	57.55	51.95
Zm00001d019041_P001	Maize	extracellular, plasma membrane	54.32	51.54
TraesCS4D01G023800.2	Wheat	nucleus	58.27	50.94
TraesCS4A01G288500.1	Wheat	nucleus	57.55	50.47
TraesCS4B01G026400.1	Wheat	nucleus	57.91	50.47
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	60.07	48.41
Zm00001d007799_P001	Maize	mitochondrion, plastid	52.88	38.28
VIT_18s0166g00180.t01	Wine grape	mitochondrion	35.97	35.09
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	15.83	28.95
VIT_06s0004g04260.t01	Wine grape	mitochondrion	10.07	26.42
VIT_08s0007g02860.t01	Wine grape	mitochondrion	11.87	24.81
VIT_08s0040g03330.t01	Wine grape	plastid	11.87	23.57
VIT_12s0059g01210.t01	Wine grape	mitochondrion	11.87	23.57
VIT_17s0000g07330.t01	Wine grape	plastid	23.38	23.47
VIT_06s0080g00870.t01	Wine grape	plastid	9.35	23.42
VIT_19s0014g04770.t01	Wine grape	mitochondrion	10.79	22.22
VIT_05s0094g00380.t01	Wine grape	mitochondrion	8.27	20.91
VIT_08s0007g00070.t01	Wine grape	mitochondrion	8.27	17.29
VIT_17s0053g00760.t01	Wine grape	plastid	9.71	16.98
VIT_13s0106g00500.t01	Wine grape	plastid	10.07	6.85

Protein Annotations

EntrezGene:100261508	wikigene:100261508	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:AM430678
ProteinID:CAN66927	ProteinID:CAN66927.1	ProteinID:CCB56139	ProteinID:CCB56139.1	UniProt:F6HNC0	EMBL:FN595998
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	EntrezGene:LOC100261508	wikigene:LOC100261508	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	TIGR:TC60488
UniParc:UPI00015C9859	ArrayExpress:VIT_13s0019g05080	EnsemblPlantsGene:VIT_13s0019g05080	EnsemblPlants:VIT_13s0019g05080.t01	unigene:Vvi.1768	RefSeq:XP_002267178
RefSeq:XP_002267178.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:6826044..6836393

Molecular Weight (calculated)

31071.3 Da

IEP (calculated)

9.751

GRAVY (calculated)

-1.423

Length

278 amino acids

Sequence
(BLAST)

001: MAGKEENRIF VGGLSWDVTE RQLENTFSRF GKIIESQIML ERDTGRPRGF GFITYADRRG MEDAIREMHG RDFGDRIISV NKAQPKMGED PDHGYNGGYS
101: SGGRGSYGGG DRSAGQDDCF KCGRPGHWAR DCPSSGGGRG RGGAPFPSRS RFSGGRGDRF GGERDRYMED RYDGGRYGDR DRFESRDNKY GTRDRYVNDR
201: YAPSGDRFSG DRYGGSDRYP QNGYGKDRGY DRDAAPRGGG DRYAGGGSAR NEGRSYRNRP GPYDRPNRGG RPSSFDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.