Factsheet for Solyc11g008210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g071560.2.1
Solyc11g008210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Solyc03g071560.2.1	AT5G04280.1	21798944
AT5G04280.1	Solyc11g008210.1.1	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079815	Potato	nucleus	88.14	81.76
VIT_13s0019g05080.t01	Wine grape	nucleus	56.27	59.71
Solyc03g071560.2.1	Tomato	nucleus	62.03	58.28
KRG90774	Soybean	nucleus	54.92	58.06
KRH35987	Soybean	nucleus	53.56	54.67
CDX80910	Canola	nucleus	43.73	49.43
GSMUA_Achr2P12550_001	Banana	nucleus	35.59	46.88
GSMUA_Achr4P22370_001	Banana	nucleus	48.81	46.3
Bra005798.1-P	Field mustard	nucleus	47.12	45.42
CDY11283	Canola	nucleus	47.12	45.42
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	46.1	43.87
TraesCS2D01G238900.1	Wheat	nucleus	42.37	42.66
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	42.71	42.42
KXG37841	Sorghum	nucleus	45.42	42.41
AT1G60650.2	Thale cress	nucleus	41.36	41.78
TraesCS2B01G259400.1	Wheat	nucleus	41.36	41.64
TraesCS2A01G237400.1	Wheat	nucleus	41.36	41.64
CDY34132	Canola	nucleus	35.93	41.57
TraesCS4D01G023800.2	Wheat	nucleus	44.75	41.51
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	43.73	41.48
TraesCS4B01G026400.1	Wheat	nucleus	44.41	41.07
TraesCS4A01G288500.1	Wheat	nucleus	44.07	41.01
Os03t0681900-01	Rice	nucleus	42.71	40.91
OQU88590	Sorghum	nucleus	40.68	39.87
Zm00001d019041_P001	Maize	extracellular, plasma membrane	38.98	39.25
Solyc10g051380.1.1	Tomato	nucleus	15.93	36.15
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	42.03	35.94
Solyc10g051390.1.1	Tomato	nucleus	14.24	35.59
Solyc01g109660.2.1	Tomato	extracellular	20.0	33.71
Solyc10g047130.1.1	Tomato	nucleus	26.44	32.64
Zm00001d007799_P001	Maize	mitochondrion, plastid	40.0	30.73
Solyc10g081180.1.1	Tomato	nucleus	17.63	23.64
Solyc01g104840.2.1	Tomato	nucleus	16.95	22.42
Solyc05g053780.2.1	Tomato	mitochondrion	11.86	21.74
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	8.47	21.55
Solyc02g066930.2.1	Tomato	nucleus	12.88	17.59
Solyc10g084630.1.1	Tomato	mitochondrion	7.46	15.94
Solyc10g083240.1.1	Tomato	mitochondrion	6.78	15.5
Solyc07g063900.2.1	Tomato	plastid	7.46	14.57
Solyc09g011210.2.1	Tomato	plastid	6.1	13.64
Solyc02g088790.2.1	Tomato	extracellular, plastid	15.59	12.33
Solyc07g049270.2.1	Tomato	mitochondrion	5.76	12.06
Solyc06g035610.2.1	Tomato	mitochondrion	5.76	11.81
Solyc11g007160.1.1	Tomato	plastid	5.42	4.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.60.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
UniProt:K4D581	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SUPFAM:SSF54928
SUPFAM:SSF57756	EnsemblPlantsGene:Solyc11g008210.1	EnsemblPlants:Solyc11g008210.1.1	UniParc:UPI000276A73A	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:2453785..2456546

Molecular Weight (calculated)

32197.5 Da

IEP (calculated)

9.760

GRAVY (calculated)

-1.403

Length

295 amino acids

Sequence
(BLAST)

001: MTPLKTQELR CSAKLAVMLD RDTGRPRGFG FLTFADRRSM EDAIREMHGR EIGDKVISVN KAQPKMSGED SDHGYGGGYG GGGRGSYRDS DRGSYGGGDR
101: GSYGGGDRGR YGGGGGGRGS YGGGDRSAGQ DNCFKCGRPG HWARDCQQEG GGRGSRALSP PPRSRFGGGS AREDRYGSDR RYTDDQYDRG HYVDKERYDS
201: KDDRYGSRDR FANDRHPAGG DRFADNKYGV SDRYAQNGSG KERGFDRDVG PRYGDRYSSG GPARYEGKSI RDRAGPYDQP RRGGGRPPAA AFDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.