Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076497 | Potato | nucleus | 65.47 | 71.22 |
| KRH42209 | Soybean | endoplasmic reticulum | 45.29 | 57.39 |
| KXG37189 | Sorghum | nucleus | 50.67 | 56.78 |
| Zm00001d034768_P005 | Maize | nucleus | 50.22 | 54.63 |
| Os03t0836200-03 | Rice | nucleus | 50.22 | 54.63 |
| Solyc10g047130.1.1 | Tomato | nucleus | 54.71 | 51.05 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 47.98 | 50.71 |
| KRH58335 | Soybean | nucleus | 46.64 | 50.0 |
| KXG24163 | Sorghum | nucleus | 48.43 | 49.54 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 47.09 | 47.95 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 47.53 | 47.75 |
| Bra025205.1-P | Field mustard | nucleus | 48.88 | 46.98 |
| Bra032933.1-P | Field mustard | nucleus | 51.12 | 46.91 |
| CDY48990 | Canola | nucleus | 51.12 | 46.91 |
| CDX83617 | Canola | nucleus | 48.43 | 46.55 |
| CDY13632 | Canola | nucleus | 49.33 | 46.03 |
| CDY52166 | Canola | nucleus | 49.33 | 45.27 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 46.64 | 45.22 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 46.64 | 45.22 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 46.64 | 45.22 |
| Solyc10g051390.1.1 | Tomato | nucleus | 23.77 | 44.92 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 38.12 | 44.5 |
| AT3G26420.1 | Thale cress | nucleus | 48.88 | 44.49 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 46.19 | 43.46 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 38.12 | 41.46 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 52.47 | 41.05 |
| Solyc10g051380.1.1 | Tomato | nucleus | 23.77 | 40.77 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 30.49 | 40.48 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 20.18 | 38.79 |
| Solyc01g109660.2.1 | Tomato | extracellular | 27.8 | 35.43 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 48.88 | 34.94 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 23.32 | 32.3 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 18.39 | 29.71 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 16.14 | 27.91 |
| Solyc07g063900.2.1 | Tomato | plastid | 15.7 | 23.18 |
| Solyc09g011210.2.1 | Tomato | plastid | 13.45 | 22.73 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 14.35 | 22.7 |
| Solyc02g066930.2.1 | Tomato | nucleus | 21.52 | 22.22 |
| Solyc10g081180.1.1 | Tomato | nucleus | 21.52 | 21.82 |
| Solyc03g071560.2.1 | Tomato | nucleus | 29.6 | 21.02 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 13.45 | 20.83 |
| Solyc11g008210.1.1 | Tomato | nucleus | 22.42 | 16.95 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 19.28 | 11.53 |
| Solyc11g007160.1.1 | Tomato | plastid | 15.25 | 8.5 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | UniProt:K4B256 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc01g104840.2 | EnsemblPlants:Solyc01g104840.2.1 | UniParc:UPI0002768B8A | InterPro:Znf_CCHC |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:93170683..93174240
Molecular Weight (calculated)
24668.9 Da
IEP (calculated)
4.587
GRAVY (calculated)
-0.477
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEDEYRCF IGNLSWSTSD RGLKDAFEKF GHLVDAKVVL DKFSGRSRGF GFVTFDEKRA MEDAIEAMNG MDLDGRAITV DKAQPQQGSG RDFDSDRPRD
101: RDRDRGRDRD RDRGSRDYGG GRGAGGGGGD CYNCGKPGHF VDLTGTEIDM EAAAAEMVVV VKEGNVLTVI VLDHMIVAVL EAIEADTLNC AEELKSPSWM
201: QMFWCMSTWC LVSLACQRNH LSS
101: RDRDRGRDRD RDRGSRDYGG GRGAGGGGGD CYNCGKPGHF VDLTGTEIDM EAAAAEMVVV VKEGNVLTVI VLDHMIVAVL EAIEADTLNC AEELKSPSWM
201: QMFWCMSTWC LVSLACQRNH LSS
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.