CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58335	Soybean	nucleus	94.89	80.29
PGSC0003DMT400045627	Potato	nucleus	74.43	61.22
PGSC0003DMT400076497	Potato	nucleus	69.89	60.0
Os03t0836200-03	Rice	nucleus	69.89	60.0
KXG37189	Sorghum	nucleus	67.61	59.8
Zm00001d034768_P005	Maize	nucleus	68.75	59.02
Bra025205.1-P	Field mustard	nucleus	72.73	55.17
CDX83617	Canola	nucleus	72.16	54.74
KXG24163	Sorghum	nucleus	67.05	54.13
TraesCS4A01G355700.1	Wheat	nucleus	64.77	54.03
CDY13632	Canola	nucleus	73.3	53.97
Solyc10g047130.1.1	Tomato	nucleus	73.3	53.97
CDY52166	Canola	nucleus	73.3	53.09
CDY48990	Canola	nucleus	73.3	53.09
Bra032933.1-P	Field mustard	nucleus	73.3	53.09
TraesCS5B01G516400.1	Wheat	nucleus	64.77	52.05
TraesCS5D01G516500.1	Wheat	nucleus	65.34	51.8
AT3G26420.1	Thale cress	nucleus	71.02	51.02
TraesCS7B01G227500.2	Wheat	nucleus	64.77	49.57
HORVU7Hr1G078140.5	Barley	nucleus	64.77	49.57
TraesCS7D01G323600.1	Wheat	nucleus	64.77	49.57
VIT_18s0166g00180.t01	Wine grape	mitochondrion	77.84	48.07
TraesCS7A01G326800.1	Wheat	nucleus	64.2	47.68
Solyc01g104840.2.1	Tomato	nucleus	57.39	45.29
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	40.34	42.26
KRH29453	Soybean	nucleus	31.82	40.0
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	46.02	39.51
KRH29451	Soybean	nucleus	38.07	39.18
KRH51528	Soybean	nucleus	40.34	39.01
KRH29454	Soybean	nucleus	36.93	38.24
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	66.48	37.5
KRH60842	Soybean	mitochondrion	39.2	37.3
KRH29452	Soybean	nucleus	32.95	37.18
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	39.2	36.13
KRH10291	Soybean	nucleus	14.2	33.78
KRH17905	Soybean	cytosol, mitochondrion, nucleus	15.91	33.73
KRG97345	Soybean	mitochondrion	26.14	32.62
KRH23034	Soybean	mitochondrion	15.34	31.4
KRH67959	Soybean	mitochondrion	22.16	30.0
KRG95817	Soybean	mitochondrion	23.3	29.5
KRH67547	Soybean	mitochondrion	22.73	28.78
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	15.34	27.84
KRH77758	Soybean	mitochondrion	17.61	27.43
KRG90774	Soybean	nucleus	42.61	26.88
KRH50325	Soybean	vacuole	19.89	25.0
KRH31570	Soybean	mitochondrion	20.45	24.83
KRH55574	Soybean	mitochondrion, plastid	18.75	22.76
KRH25927	Soybean	mitochondrion, plastid	18.75	22.76
KRH24832	Soybean	endoplasmic reticulum	18.18	22.7
KRH35987	Soybean	nucleus	36.36	22.15
KRH24829	Soybean	mitochondrion	17.61	21.23
KRH01278	Soybean	mitochondrion, nucleus, plastid	26.7	19.26
KRH03133	Soybean	nucleus	28.98	18.55
KRH45033	Soybean	nucleus, plastid	25.0	17.96
KRH56813	Soybean	mitochondrion	26.7	17.15
KRH09475	Soybean	plastid	17.05	16.67
KRH40931	Soybean	mitochondrion	20.45	15.58
KRH38934	Soybean	plastid	10.8	12.34
KRH54698	Soybean	plastid	35.8	9.35
KRG92035	Soybean	plastid	19.89	8.97

Protein Annotations

EntrezGene:100526902	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02004791	EnsemblPlantsGene:GLYMA_08G075700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:K7L5F9	EnsemblPlants:KRH42209	ProteinID:KRH42209	ProteinID:KRH42209.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR45429
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI000295AAC1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:5789153..5792426

Molecular Weight (calculated)

19161.0 Da

IEP (calculated)

9.209

GRAVY (calculated)

-1.105

Length

176 amino acids

Sequence
(BLAST)

001: MSDVEEYRCF IGGLAWSTSD RKLKDTFEKF GKLIEAKVVV DKFSGRSRGF GFVTFDDKKA MDEAIDAMNG MDLDGRTITV DRAQPQQGST RGDGDRYRDR
101: GRDRDRDHGG GGGRGSNGGE CFKCGKPGHF ARECPSEGSR GGKYGGRESR YGGSSGGGYG PDRADRSSGG RSRGWW

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.