CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRH15102
KRH35987
KRH73034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	KRH15102	AT3G55460.1	21798944
AT5G04280.1	KRH73034	AT3G55460.1	21798944
AT5G04280.1	KRG90774	AT5G04280.1	21798944
AT5G04280.1	KRH35987	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35987	Soybean	nucleus	86.38	83.39
VIT_13s0019g05080.t01	Wine grape	nucleus	79.21	79.5
PGSC0003DMT400043581	Potato	nucleus	65.23	67.16
GSMUA_Achr2P12550_001	Banana	nucleus	49.1	61.16
GSMUA_Achr4P22370_001	Banana	nucleus	65.95	59.16
AT1G60650.2	Thale cress	nucleus	61.29	58.56
Solyc03g071560.2.1	Tomato	nucleus	65.59	58.28
Bra005798.1-P	Field mustard	nucleus	63.44	57.84
CDY11283	Canola	nucleus	63.44	57.84
PGSC0003DMT400079815	Potato	nucleus	65.23	57.23
CDX80910	Canola	nucleus	52.33	55.94
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	62.01	55.81
Solyc11g008210.1.1	Tomato	nucleus	58.06	54.92
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	58.42	54.88
CDY34132	Canola	nucleus	49.82	54.51
TraesCS2D01G238900.1	Wheat	nucleus	55.91	53.24
TraesCS2A01G237400.1	Wheat	nucleus	55.2	52.56
KXG37841	Sorghum	nucleus	59.5	52.53
TraesCS2B01G259400.1	Wheat	nucleus	54.84	52.22
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	58.06	52.09
Os03t0681900-01	Rice	nucleus	56.63	51.3
TraesCS4D01G023800.2	Wheat	nucleus	58.42	51.26
TraesCS4A01G288500.1	Wheat	nucleus	58.06	51.1
TraesCS4B01G026400.1	Wheat	nucleus	58.06	50.78
KRH29451	Soybean	nucleus	30.82	50.29
OQU88590	Sorghum	nucleus	54.12	50.17
KRH29453	Soybean	nucleus	24.37	48.57
Zm00001d019041_P001	Maize	extracellular, plasma membrane	50.9	48.46
KRH51528	Soybean	nucleus	31.54	48.35
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	58.42	47.25
KRH29454	Soybean	nucleus	28.67	47.06
KRH60842	Soybean	mitochondrion	31.18	47.03
KRH29452	Soybean	nucleus	26.16	46.79
KRH58335	Soybean	nucleus	31.9	42.79
KRH42209	Soybean	endoplasmic reticulum	26.88	42.61
Zm00001d007799_P001	Maize	mitochondrion, plastid	50.9	36.98
KRH23034	Soybean	mitochondrion	10.04	32.56
KRH10291	Soybean	nucleus	7.89	29.73
KRH67959	Soybean	mitochondrion	12.9	27.69
KRG97345	Soybean	mitochondrion	13.98	27.66
KRH77758	Soybean	mitochondrion	10.04	24.78
KRH03133	Soybean	nucleus	23.66	24.0
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	8.24	23.71
KRH56813	Soybean	mitochondrion	22.22	22.63
KRH01278	Soybean	mitochondrion, nucleus, plastid	19.71	22.54
KRH45033	Soybean	nucleus, plastid	19.71	22.45
KRG95817	Soybean	mitochondrion	10.75	21.58
KRH67547	Soybean	mitochondrion	10.75	21.58
KRH31570	Soybean	mitochondrion	10.39	20.0
KRH50325	Soybean	vacuole	10.04	20.0
KRH25927	Soybean	mitochondrion, plastid	10.04	19.31
KRH24829	Soybean	mitochondrion	10.04	19.18
KRH24832	Soybean	endoplasmic reticulum	9.68	19.15
KRH17905	Soybean	cytosol, mitochondrion, nucleus	5.38	18.07
KRH55574	Soybean	mitochondrion, plastid	9.32	17.93
KRH09475	Soybean	plastid	11.11	17.22
KRH40931	Soybean	mitochondrion	11.11	13.42
KRH54698	Soybean	plastid	31.9	13.2
KRH38934	Soybean	plastid	6.81	12.34
KRG92035	Soybean	plastid	9.32	6.67

Protein Annotations

EntrezGene:100809519	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02012640	EnsemblPlantsGene:GLYMA_20G113200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	UniProt:I1NFF9
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRG90774	ProteinID:KRG90774	ProteinID:KRG90774.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993
PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI000233DBD6	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:35518990..35524492

Molecular Weight (calculated)

30969.5 Da

IEP (calculated)

9.504

GRAVY (calculated)

-1.277

Length

279 amino acids

Sequence
(BLAST)

001: MAGKEENRIF VGGLSWEVTE RQLEHAFARY GKILECQIMM ERDTGRPRGF GFITFADRRG MEDAIKEMHG REIGDRIISV NKAQPKMGGD DVDQGYRGGY
101: SSGGRGSYGA GDRVGQDDCF KCGRPGHWAR DCPLAGGGRG RGGSSFPSRP RFGAAGGNGD RLGGERDRYV DDRYEGGRYG DRDRFDNRDY KYGSRDRYAS
201: DRYPTSGDRF ASDRYGGGSD YPQNGYGKER GYDRYGGPRG GADRYGSGMG GRDEGRSYRG RPGPYDRPSR GSRPSLDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.