Factsheet for GSMUA_Achr2P12550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P17340_001
GSMUA_Achr2P12550_001
GSMUA_Achr4P22370_001
GSMUA_Achr4P28550_001
GSMUA_Achr8P34280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	GSMUA_Achr1P17340_001	AT3G55460.1	21798944
AT5G04280.1	GSMUA_Achr8P34280_001	AT3G55460.1	21798944
AT5G04280.1	GSMUA_Achr2P12550_001	AT5G04280.1	21798944
AT5G04280.1	GSMUA_Achr4P22370_001	AT5G04280.1	21798944
AT5G04280.1	GSMUA_Achr4P28550_001	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22370_001	Banana	nucleus	83.93	60.45
VIT_13s0019g05080.t01	Wine grape	nucleus	64.29	51.8
KRG90774	Soybean	nucleus	61.16	49.1
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	75.45	48.99
TraesCS2A01G237400.1	Wheat	nucleus	60.71	46.42
TraesCS2B01G259400.1	Wheat	nucleus	60.71	46.42
TraesCS2D01G238900.1	Wheat	nucleus	60.27	46.08
KXG37841	Sorghum	nucleus	64.29	45.57
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	60.27	45.45
PGSC0003DMT400043581	Potato	nucleus	54.46	45.02
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	62.05	44.69
TraesCS4D01G023800.2	Wheat	nucleus	63.39	44.65
TraesCS4B01G026400.1	Wheat	nucleus	63.39	44.51
Os03t0681900-01	Rice	nucleus	61.16	44.48
TraesCS4A01G288500.1	Wheat	nucleus	62.5	44.16
OQU88590	Sorghum	nucleus	58.93	43.85
Zm00001d019041_P001	Maize	extracellular, plasma membrane	54.91	41.98
GSMUA_Achr7P27650_001	Banana	nucleus	24.55	41.35
KRH35987	Soybean	nucleus	52.68	40.83
AT1G60650.2	Thale cress	nucleus	53.12	40.75
PGSC0003DMT400079815	Potato	nucleus	56.25	39.62
GSMUA_Achr8P05200_001	Banana	cytosol	26.79	38.71
Bra005798.1-P	Field mustard	nucleus	52.68	38.56
CDY11283	Canola	nucleus	52.68	38.56
Solyc03g071560.2.1	Tomato	nucleus	54.02	38.53
VIT_08s0007g04870.t01	Wine grape	cytosol	42.41	38.31
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	52.68	38.06
GSMUA_Achr3P30570_001	Banana	plasma membrane	28.57	37.65
GSMUA_Achr4P14550_001	Banana	nucleus	26.34	37.34
CDY34132	Canola	nucleus	41.52	36.47
CDX80910	Canola	nucleus	41.96	36.02
Solyc11g008210.1.1	Tomato	nucleus	46.88	35.59
Zm00001d007799_P001	Maize	mitochondrion, plastid	54.46	31.77
GSMUA_Achr6P34250_001	Banana	mitochondrion	13.84	28.18
GSMUA_Achr2P19090_001	Banana	mitochondrion	12.95	27.36
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	13.84	26.96
GSMUA_Achr11P...	Banana	mitochondrion	12.95	26.85
GSMUA_Achr7P02750_001	Banana	mitochondrion	17.86	26.67
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	19.2	25.6
GSMUA_Achr6P35640_001	Banana	nucleus	14.73	23.74
GSMUA_Achr4P16080_001	Banana	mitochondrion	19.64	23.16
GSMUA_Achr11P...	Banana	mitochondrion	13.39	22.73
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	20.54	22.44
GSMUA_Achr9P07090_001	Banana	mitochondrion	23.66	22.27
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	18.75	21.99
GSMUA_Achr4P03230_001	Banana	mitochondrion	25.0	21.88
GSMUA_Achr8P07380_001	Banana	mitochondrion	12.05	20.0
GSMUA_Achr5P15860_001	Banana	plastid	14.29	18.82
GSMUA_Achr6P15340_001	Banana	plastid	14.29	18.18
GSMUA_Achr2P01230_001	Banana	nucleus	12.95	9.29

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12550_001	EnsemblPlants:GSMUA_Achr2T12550_001	EnsemblPlantsGene:GSMUA_Achr2G12550_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44993	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002954350	UniProt:M0S7E6	MapMan:16.7.2	:	:

Description

Putative RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G12550_001]

Coordinates

chr2:+:14984331..14989248

Molecular Weight (calculated)

25429.8 Da

IEP (calculated)

9.066

GRAVY (calculated)

-1.384

Length

224 amino acids

Sequence
(BLAST)

001: MSAKEENRIF VGGLSWDTTE RRLEAEFSRF GKVIETQVML ERDTGRPRGF GFVTFSDPRA VEVSISEMHE RELDGRVISV NKAQPKISTD DSTYGYNGGG
101: YTPGSKGDRY GDRDHIDSRD SRYSGGRDRF DNDRDRYAND RYGPPVDRFS GDRYGGRPDR YPQNGYSRER SYEKDRDGPR GGGSDRYGSG GPACYDGGGS
201: FRNRPGPYDR PNRGRRPSSY DVRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.