Factsheet for Bra005798.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005798.1-P
Bra014741.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Bra014741.1-P	AT3G55460.1	21798944
AT5G04280.1	Bra005798.1-P	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11283	Canola	nucleus	100.0	100.0
CDX80910	Canola	nucleus	83.01	97.32
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	89.54	88.39
VIT_13s0019g05080.t01	Wine grape	nucleus	58.17	64.03
KRG90774	Soybean	nucleus	57.84	63.44
PGSC0003DMT400043581	Potato	nucleus	53.59	60.52
KRH35987	Soybean	nucleus	50.33	53.29
GSMUA_Achr2P12550_001	Banana	nucleus	38.56	52.68
Solyc03g071560.2.1	Tomato	nucleus	53.27	51.91
GSMUA_Achr4P22370_001	Banana	nucleus	51.63	50.8
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	48.37	49.83
KXG37841	Sorghum	nucleus	50.65	49.05
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	49.67	48.87
PGSC0003DMT400079815	Potato	nucleus	50.65	48.74
Solyc11g008210.1.1	Tomato	nucleus	45.42	47.12
Os03t0681900-01	Rice	nucleus	47.39	47.08
TraesCS4D01G023800.2	Wheat	nucleus	48.69	46.86
TraesCS2D01G238900.1	Wheat	nucleus	44.77	46.76
TraesCS4A01G288500.1	Wheat	nucleus	48.37	46.69
OQU88590	Sorghum	nucleus	45.75	46.51
TraesCS2B01G259400.1	Wheat	nucleus	44.44	46.42
TraesCS2A01G237400.1	Wheat	nucleus	44.44	46.42
TraesCS4B01G026400.1	Wheat	nucleus	48.37	46.4
Zm00001d019041_P001	Maize	extracellular, plasma membrane	43.79	45.73
Bra030284.1-P	Field mustard	nucleus	22.22	40.48
Bra031210.1-P	Field mustard	nucleus	22.22	40.48
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	45.42	40.29
Bra010693.1-P	Field mustard	nucleus	21.57	40.0
Bra011869.1-P	Field mustard	cytosol	20.91	39.51
Bra001972.1-P	Field mustard	nucleus	20.59	38.41
Bra025205.1-P	Field mustard	nucleus	27.45	36.21
Zm00001d007799_P001	Maize	mitochondrion, plastid	44.44	35.42
Bra032933.1-P	Field mustard	nucleus	27.45	34.57
Bra037056.1-P	Field mustard	mitochondrion	16.01	32.67
Bra025674.1-P	Field mustard	mitochondrion	15.03	31.72
Bra013997.1-P	Field mustard	mitochondrion	14.05	29.66
Bra002976.1-P	Field mustard	mitochondrion	8.5	25.0
Bra014000.1-P	Field mustard	mitochondrion	17.32	23.87
Bra020279.1-P	Field mustard	mitochondrion	8.5	23.64
Bra028739.1-P	Field mustard	mitochondrion	10.78	22.6
Bra005189.1-P	Field mustard	plastid	10.46	22.22
Bra008100.1-P	Field mustard	cytosol	5.88	21.95
Bra008142.1-P	Field mustard	mitochondrion	18.3	21.21
Bra035944.1-P	Field mustard	plastid	16.99	19.77
Bra012986.1-P	Field mustard	mitochondrion	19.61	19.67
Bra029020.1-P	Field mustard	plastid	9.8	19.61
Bra015926.1-P	Field mustard	mitochondrion	17.97	19.3
Bra029692.1-P	Field mustard	mitochondrion	8.82	18.88
Bra000516.1-P	Field mustard	mitochondrion	7.19	16.42
Bra008020.1-P	Field mustard	endoplasmic reticulum	9.8	14.42
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	8.82	10.51
Bra031244.1-P	Field mustard	plastid	8.5	6.97

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra005798	EnsemblPlants:Bra005798.1	EnsemblPlants:Bra005798.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009409	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0031490	GO:GO:0045892
GO:GO:0048026	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:M4CNL0	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI000253FB9A	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein

Coordinates

chrA03:+:698746..701385

Molecular Weight (calculated)

33383.2 Da

IEP (calculated)

9.354

GRAVY (calculated)

-1.039

Length

306 amino acids

Sequence
(BLAST)

001: MATKEGSRIF VGGLSPEVTE RDLQRTFGRF GEILDCQIMM ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKMGGR DDGESHGSRG
101: GGRDGGYSLA GKGSFGGGGR VGEDECFKCG RVGHWARDCP SAAGGRGGPV GGFSSRSAYG GSDGRVDRYA DRERYVDRER YIDDRYDGGA PRFGARDRFD
201: SREAYIPRDR YASDRYAAPV DRFAGGDRYS RGSDRYPPAS YEKPRSFERD VVPSAGSDRY GGGRAGGPIR GGDEGRGFRS RASGPYDRPS RSSGGGYPSS
301: GTLDRY

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.