Factsheet for Bra030284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000144.1-P
Bra001470.1-P
Bra001507.1-P
Bra001551.1-P
Bra001661.1-P
Bra002116.1-P
Bra003426.1-P
Bra003892.1-P
Bra005019.1-P
Bra006033.1-P
Bra006429.1-P
Bra007555.1-P
Bra008012.1-P
Bra009081.1-P
Bra010184.1-P
Bra010693.1-P
Bra011869.1-P
Bra012371.1-P
Bra013148.1-P
Bra013458.1-P
Bra014473.1-P
Bra016084.1-P
Bra016353.1-P
Bra016729.1-P
Bra017055.1-P
Bra017563.1-P
Bra019722.1-P
Bra020926.1-P
Bra021241.1-P
Bra021556.1-P
Bra022032.1-P
Bra022356.1-P
Bra023645.1-P
Bra024580.1-P
Bra025219.1-P
Bra026904.1-P
Bra027338.1-P
Bra027431.1-P
Bra028505.1-P
Bra028615.1-P
Bra029124.1-P
Bra032939.1-P
Bra034729.1-P
Bra034731.1-P
Bra034927.1-P
Bra035392.1-P
Bra035393.1-P
Bra035529.1-P
Bra035531.1-P
Bra037207.1-P
Bra037560.1-P
Bra037977.1-P
Bra038805.1-P
Bra039342.1-P
Bra039484.1-P
Bra040146.1-P
Bra040213.1-P
Bra041036.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21660.1	Bra016729.1-P	AT1G13440.1	23395902
AT2G21660.1	Bra019722.1-P	AT1G13440.1	23395902
AT2G21660.1	Bra026904.1-P	AT1G13440.1	23395902
AT2G21660.1	Bra040146.1-P	AT1G13440.1	23395902
AT2G21660.1	Bra040213.1-P	AT1G13440.1	23395902
AT2G21660.1	Bra012371.1-P	AT1G23310.1	23395902
AT2G21660.1	Bra016353.1-P	AT1G23310.1	23395902
AT2G21660.1	Bra024580.1-P	AT1G23310.1	23395902
AT2G21660.1	Bra034927.1-P	AT1G42970.1	23395902
AT2G21660.1	Bra022356.1-P	AT1G49240.1	23395902
AT2G21660.1	Bra037560.1-P	AT1G49240.1	23395902
AT2G21660.1	Bra029124.1-P	AT1G54270.1	23395902
AT2G21660.1	Bra037977.1-P	AT1G54270.1	23395902
AT2G21660.1	Bra003892.1-P	AT1G72150.1	23395902
AT2G21660.1	Bra008012.1-P	AT1G72150.1	23395902
AT2G21660.1	Bra016084.1-P	AT1G72150.1	23395902
AT2G21660.1	Bra013148.1-P	AT2G13360.1	23395902
AT2G21660.1	Bra037207.1-P	AT2G13360.1	23395902
AT2G21660.1	Bra010184.1-P	AT2G16950.1	14756317
AT2G21660.1	Bra000144.1-P	AT2G39730.1	23395902
AT2G21660.1	Bra005019.1-P	AT2G39730.1	23395902
AT2G21660.1	Bra017055.1-P	AT2G39730.1	23395902
AT2G21660.1	Bra016729.1-P	AT3G04120.1	23395902
AT2G21660.1	Bra019722.1-P	AT3G04120.1	23395902
AT2G21660.1	Bra026904.1-P	AT3G04120.1	23395902
AT2G21660.1	Bra040146.1-P	AT3G04120.1	23395902
AT2G21660.1	Bra040213.1-P	AT3G04120.1	23395902
AT2G21660.1	Bra001470.1-P	AT3G12780.1	23395902
AT2G21660.1	Bra034729.1-P	AT3G12780.1	23395902
AT2G21660.1	Bra034731.1-P	AT3G12780.1	23395902
AT2G21660.1	Bra039342.1-P	AT3G12780.1	23395902
AT2G21660.1	Bra001507.1-P	AT3G13470.1	23395902
AT2G21660.1	Bra027431.1-P	AT3G13470.1	23395902
AT2G21660.1	Bra001551.1-P	AT3G14420.1	23395902
AT2G21660.1	Bra021556.1-P	AT3G14420.1	23395902
AT2G21660.1	Bra027338.1-P	AT3G14420.1	23395902
AT2G21660.1	Bra001661.1-P	AT3G17390.1	23395902
AT2G21660.1	Bra021241.1-P	AT3G17390.1	23395902
AT2G21660.1	Bra041036.1-P	AT3G17390.1	23395902
AT2G21660.1	Bra025219.1-P	AT3G26650.1	23395902
AT2G21660.1	Bra032939.1-P	AT3G26650.1	23395902
AT2G21660.1	Bra003426.1-P	AT3G60750.1	23395902
AT2G21660.1	Bra007555.1-P	AT3G60750.1	23395902
AT2G21660.1	Bra014473.1-P	AT3G60750.1	23395902
AT2G21660.1	Bra013458.1-P	AT4G20360.1	23395902
AT2G21660.1	Bra020926.1-P	AT4G20360.1	23395902
AT2G21660.1	Bra038805.1-P	AT4G20360.1	23395902
AT2G21660.1	Bra010693.1-P	AT4G39260.1	23395902
AT2G21660.1	Bra011869.1-P	AT4G39260.1	23395902
AT2G21660.1	Bra006033.1-P	AT5G09810.1	23395902
AT2G21660.1	Bra009081.1-P	AT5G09810.1	23395902
AT2G21660.1	Bra028615.1-P	AT5G09810.1	23395902
AT2G21660.1	Bra002116.1-P	AT5G17920.1	23395902
AT2G21660.1	Bra006429.1-P	AT5G17920.1	23395902
AT2G21660.1	Bra023645.1-P	AT5G17920.1	23395902
AT2G21660.1	Bra035393.1-P	AT5G35620.1	23395902
AT2G21660.1	Bra035531.1-P	AT5G35620.1	23395902
AT2G21660.1	Bra039484.1-P	AT5G35620.1	23395902
AT2G21660.1	Bra035392.1-P	AT5G35630.1	23395902
AT2G21660.1	Bra035529.1-P	AT5G35630.1	23395902
AT2G21660.1	Bra028505.1-P	AT5G41780.1	23395902
AT2G21660.1	Bra017563.1-P	AT5G46330.1	23395902
AT2G21660.1	Bra022032.1-P	AT5G46330.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15876	Canola	nucleus	100.0	99.41
CDY72366	Canola	nucleus	97.62	95.91
Bra031210.1-P	Field mustard	nucleus	89.29	89.29
AT2G21660.1	Thale cress	nucleus	88.69	84.66
Solyc10g051390.1.1	Tomato	nucleus	55.36	78.81
Bra010693.1-P	Field mustard	nucleus	77.38	78.79
GSMUA_Achr7P27650_001	Banana	nucleus	61.31	77.44
Bra011869.1-P	Field mustard	cytosol	73.81	76.54
VIT_03s0063g02610.t01	Wine grape	nucleus	73.21	75.93
Bra001972.1-P	Field mustard	nucleus	72.62	74.39
KRH29451	Soybean	nucleus	75.6	74.27
GSMUA_Achr8P05200_001	Banana	cytosol	68.45	74.19
PGSC0003DMT400001879	Potato	cytosol	77.38	73.86
Solyc01g109660.2.1	Tomato	extracellular	76.79	73.71
KRH29453	Soybean	nucleus	61.31	73.57
GSMUA_Achr4P14550_001	Banana	nucleus	67.86	72.15
KRH51528	Soybean	nucleus	77.98	71.98
KRH29452	Soybean	nucleus	66.67	71.79
Os12t0632000-01	Rice	nucleus	69.05	71.6
Solyc10g051380.1.1	Tomato	nucleus	54.76	70.77
GSMUA_Achr3P30570_001	Banana	plasma membrane	71.43	70.59
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	66.67	70.44
TraesCS6A01G216500.1	Wheat	nucleus	67.86	70.37
TraesCS6B01G246400.1	Wheat	nucleus	67.86	70.37
HORVU6Hr1G055440.1	Barley	nucleus	67.26	69.75
TraesCS6D01G199100.1	Wheat	nucleus	64.29	69.68
KRH60842	Soybean	mitochondrion	76.19	69.19
Zm00001d041246_P001	Maize	nucleus	59.52	68.97
KRH29454	Soybean	nucleus	69.64	68.82
TraesCS4B01G020300.1	Wheat	extracellular	66.67	68.71
TraesCS4A01G293000.1	Wheat	plastid	66.07	68.52
PGSC0003DMT400084266	Potato	extracellular	65.48	68.32
PGSC0003DMT400084290	Potato	nucleus	67.26	68.07
PGSC0003DMT400084258	Potato	nucleus	67.26	68.07
PGSC0003DMT400083014	Potato	nucleus	67.26	68.07
TraesCS5B01G013200.1	Wheat	nucleus	67.26	67.66
Zm00001d031168_P001	Maize	plastid	61.9	67.1
KXG37870	Sorghum	nucleus	67.86	67.06
TraesCS4D01G018500.1	Wheat	nucleus	66.07	66.87
EES16438	Sorghum	nucleus	65.48	66.67
TraesCS5A01G015000.1	Wheat	nucleus	66.07	65.29
TraesCS5D01G020900.1	Wheat	plastid	66.67	64.37
HORVU5Hr1G002150.1	Barley	nucleus	54.76	53.18
Os03t0670700-01	Rice	nucleus	61.9	53.06
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	29.17	49.49
Bra037056.1-P	Field mustard	mitochondrion	42.86	48.0
Bra013997.1-P	Field mustard	mitochondrion	40.48	46.9
Bra025674.1-P	Field mustard	mitochondrion	32.74	37.93
Bra014000.1-P	Field mustard	mitochondrion	46.43	35.14
Bra025205.1-P	Field mustard	nucleus	44.05	31.9
Bra002976.1-P	Field mustard	mitochondrion	19.64	31.73
Bra032933.1-P	Field mustard	nucleus	45.83	31.69
Bra008142.1-P	Field mustard	mitochondrion	48.81	31.06
Bra005189.1-P	Field mustard	plastid	26.19	30.56
Bra015926.1-P	Field mustard	mitochondrion	51.79	30.53
Bra035944.1-P	Field mustard	plastid	47.02	30.04
Bra020279.1-P	Field mustard	mitochondrion	17.86	27.27
Bra012986.1-P	Field mustard	mitochondrion	49.4	27.21
Bra008100.1-P	Field mustard	cytosol	13.1	26.83
Bra028739.1-P	Field mustard	mitochondrion	21.43	24.66
Bra029692.1-P	Field mustard	mitochondrion	20.83	24.48
Bra029020.1-P	Field mustard	plastid	21.43	23.53
Bra005798.1-P	Field mustard	nucleus	40.48	22.22
Bra008020.1-P	Field mustard	endoplasmic reticulum	26.79	21.63
Bra000516.1-P	Field mustard	mitochondrion	14.29	17.91
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	18.45	12.06
Bra031244.1-P	Field mustard	plastid	20.83	9.38

Protein Annotations

EnsemblPlants:Bra030284.1	EnsemblPlants:Bra030284.1-P	EnsemblPlantsGene:Bra030284	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002543E1C	UniProt:M4ENB4	MapMan:16.7.2	:	:

Description

AT2G21660 (E=5e-040) ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding

Coordinates

chrA04:-:9370885..9371671

Molecular Weight (calculated)

16260.4 Da

IEP (calculated)

5.280

GRAVY (calculated)

-0.778

Length

168 amino acids

Sequence
(BLAST)

001: MASPDVEYRC FVGGLAWATD ERSLETAFSK FGELVDSKII NDRETGRSRG FGFVTFKDEQ SMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGGRGGGG
101: GYRGGGGGYG GGGGYGGGRR EGGYSGGGGG GYSRGGGGGG YGGGGRREGG GYGGGDGGGY GGGGGGGW

Best Arabidopsis Sequence Match ( AT2G21660.1 )
(BLAST)

001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW

Arabidopsis Description

RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.