Factsheet for Bra001551.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002826.1-P
Bra028938.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	Bra002826.1-P	AT5G56290.1	21798944
AT3G14420.1	Bra028938.1-P	AT5G56290.1	21798944
AT3G14420.1	Bra035613.1-P	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82483	Canola	peroxisome	97.77	93.83
Bra021556.1-P	Field mustard	peroxisome	95.25	92.92
AT3G14420.1	Thale cress	peroxisome	95.25	92.92
Bra027338.1-P	Field mustard	peroxisome	95.53	92.43
Bra021555.1-P	Field mustard	peroxisome	89.11	91.93
Bra001550.1-P	Field mustard	peroxisome	93.58	91.28
Solyc07g056540.2.1	Tomato	plastid	89.94	86.79
PGSC0003DMT400071115	Potato	cytosol	89.39	86.25
KRH43857	Soybean	peroxisome	88.55	85.44
VIT_10s0003g03830.t01	Wine grape	peroxisome	88.55	85.22
KRH13608	Soybean	nucleus	87.43	84.37
Bra012602.1-P	Field mustard	peroxisome	83.24	80.98
Bra013299.1-P	Field mustard	peroxisome	77.65	75.96
GSMUA_Achr4P22900_001	Banana	peroxisome	32.4	75.32
Bra005793.1-P	Field mustard	peroxisome	24.3	74.36
Bra027339.1-P	Field mustard	peroxisome	86.59	66.1
Bra021533.1-P	Field mustard	peroxisome	58.38	57.58
Bra021535.1-P	Field mustard	peroxisome	57.54	56.75
Bra036980.1-P	Field mustard	peroxisome	8.94	56.14
Bra001536.1-P	Field mustard	peroxisome	55.87	55.4
Bra035032.1-P	Field mustard	mitochondrion	31.84	52.29
Bra027370.1-P	Field mustard	vacuole	55.31	19.78

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	EnsemblPlantsGene:Bra001551	EnsemblPlants:Bra001551.1
EnsemblPlants:Bra001551.1-P	InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396	UniProt:M4CBH1	PFAM:PF01070	PIRSF:PIRSF000138
ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI000254096F
SEG:seg	:	:	:	:	:

Description

AT3G14420 (E=1e-138) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative

Coordinates

chrA03:+:16990785..16992815

Molecular Weight (calculated)

39679.9 Da

IEP (calculated)

9.727

GRAVY (calculated)

-0.125

Length

358 amino acids

Sequence
(BLAST)

001: MEITNVTEYE AIAKEKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS KRWLTQKVRE YATARAASAA GTIMTLSSWA
101: TSSVEEVAST GPGIRFFQLY VYKNRNVVEQ LVRRAERAGF KAIALTVDTP RLGRRESDIK NRFTLPPNLT LKNFEGLDLG KMDEANDSGL ASYVAGQIDR
201: TLSWKDVQWL QTITKMPILV KGVLTGEDAR IAVQAGAAGI IVSNHGARQL DYAPATISAL EEVVKATQGR IPVFLDGGVR RGTDVFKALA LGASGIFIGR
301: PVVFSLAAEG EDGVRKVLQM LRDEFELTMA LSGCRTLSEI TRNHITTEWD TPRPLARL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.