Factsheet for Bra035531.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003526.1-P
Bra004057.1-P
Bra004058.1-P
Bra004059.1-P
Bra004060.1-P
Bra016579.1-P
Bra020407.1-P
Bra022535.1-P
Bra025940.1-P
Bra031007.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35620.1	Bra016579.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra025940.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra031007.1-P	AT1G17880.1	15716105
AT5G35620.1	Bra003526.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004057.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004058.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004059.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra004060.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra022535.1-P	AT3G45140.1	11117257
AT5G35620.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49364	Canola	cytosol	99.5	99.5
CDX84118	Canola	cytosol	97.5	97.5
Bra035393.1-P	Field mustard	cytosol	81.0	81.41
Bra039484.1-P	Field mustard	cytosol	80.5	81.31
AT5G35620.1	Thale cress	cytosol	77.5	78.28
GSMUA_Achr4P25000_001	Banana	cytosol	64.0	66.67
PGSC0003DMT400044186	Potato	cytosol	65.5	65.5
VIT_05s0049g01770.t01	Wine grape	cytosol	65.5	64.22
Solyc09g090580.2.1	Tomato	nucleus	62.0	62.0
Os10t0467600-01	Rice	cytosol, plastid	63.0	61.16
Zm00001d032775_P002	Maize	cytosol, extracellular	62.0	59.05
EER94108	Sorghum	cytosol	61.5	58.57
KRG90357	Soybean	endoplasmic reticulum	58.5	58.5
KRH33614	Soybean	cytosol	59.0	57.56
GSMUA_Achr5P12940_001	Banana	cytosol	60.0	57.42
TraesCS1B01G167100.1	Wheat	cytosol	59.0	56.46
TraesCS1D01G146500.1	Wheat	golgi	58.0	55.5
HORVU1Hr1G039260.2	Barley	cytosol	57.5	54.76
TraesCS1A01G149200.1	Wheat	cytosol	58.0	54.46
Zm00001d014065_P001	Maize	cytosol, extracellular	58.0	53.7
Bra012622.1-P	Field mustard	cytosol	31.0	47.33
Bra013283.1-P	Field mustard	cytosol	45.0	39.47
Bra021026.1-P	Field mustard	cytosol	44.5	38.03
Bra030147.1-P	Field mustard	cytosol	38.5	31.56
Bra032325.1-P	Field mustard	cytosol	39.0	31.45
Bra002134.1-P	Field mustard	cytosol	26.0	27.51
Bra006439.1-P	Field mustard	cytosol	29.0	26.61
Bra023664.1-P	Field mustard	cytosol	28.5	25.45

Protein Annotations

MapMan:17.4.2.4.1	Gene3D:3.30.760.10	ProteinID:AGN71688	ProteinID:AGN71688.1	EnsemblPlantsGene:Bra035531	EnsemblPlants:Bra035531.1
EnsemblPlants:Bra035531.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR023398	EMBL:KC769694	UniProt:M4F381	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960
PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0002546384

Description

AT5G35620 (E=8e-094) LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine cap binding / RNA binding / translation initiation factor

Coordinates

chrA08:+:8252320..8253447

Molecular Weight (calculated)

22699.8 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.540

Length

200 amino acids

Sequence
(BLAST)

001: MATEDVNEAL AAAEVTAIES TEKQQPPHKL ERKWSFWFDN QSKPKQGAAW GASLRKACTF DTVEDFWGLH ETIFVPSRLI PNADIHMFKA GVEPKWEDPE
101: CANGGKWTYV VTNNRKQALD KAWLETLMAL VGEQFDEADE ICGVVASVRP KQDKLSLWTR TKSNEAVLMG IGKKWKEILD VTDKISFTNH DDARRSRFSV

Best Arabidopsis Sequence Match ( AT5G35620.3 )
(BLAST)

001: MATDDVNEPL PAAAELPATE AEKQPHKLER KWSFWFDNQS KKGAAWGASL RKAYTFDTVE DFWGLHETIF QTSKLTANAE IHLFKAGVEP KWEDPECANG
101: GKWTWVVTAN RKEALDKGWL ETLMALIGEQ FDEADEICGV VASVRPQSKQ DKLSLWTRTK SNEAVLMGIG KKWKEILDVT DKITFNNHDD SRRSRFTV

Arabidopsis Description

EIF(ISO)4ELSP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UEE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.