Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra022374.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18040.1 | Bra022374.1-P | AT4G01580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78824 | Canola | cytosol | 97.81 | 97.81 |
| Bra012622.1-P | Field mustard | cytosol | 50.0 | 87.02 |
| Bra021026.1-P | Field mustard | cytosol | 86.84 | 84.62 |
| AT4G18040.1 | Thale cress | cytosol | 85.09 | 82.55 |
| VIT_10s0003g02250.t01 | Wine grape | cytosol | 63.16 | 61.02 |
| KRH21134 | Soybean | cytosol | 63.16 | 60.76 |
| Zm00001d041682_P001 | Maize | cytosol, extracellular | 57.46 | 60.09 |
| EES02138 | Sorghum | cytosol | 57.02 | 59.09 |
| Solyc02g021550.2.1 | Tomato | cytosol | 47.81 | 58.92 |
| Zm00001d041973_P001 | Maize | cytosol | 56.58 | 58.64 |
| TraesCS3D01G527800.1 | Wheat | cytosol, golgi | 54.82 | 58.14 |
| TraesCS3B01G591300.1 | Wheat | cytosol | 54.82 | 58.14 |
| TraesCS3A01G521500.1 | Wheat | cytosol | 54.82 | 58.14 |
| Os01t0970400-01 | Rice | cytosol | 57.46 | 57.71 |
| HORVU3Hr1G113940.2 | Barley | cytosol | 54.39 | 57.67 |
| Solyc03g005870.2.1 | Tomato | cytosol, nucleus | 58.33 | 57.58 |
| PGSC0003DMT400034911 | Potato | cytosol | 57.89 | 57.14 |
| GSMUA_Achr3P02580_001 | Banana | cytosol | 55.7 | 55.46 |
| GSMUA_Achr4P12820_001 | Banana | cytosol | 57.46 | 53.25 |
| KRH11115 | Soybean | cytosol | 52.19 | 50.85 |
| Bra030147.1-P | Field mustard | cytosol | 53.51 | 50.0 |
| Bra032325.1-P | Field mustard | cytosol | 53.95 | 49.6 |
| Bra035531.1-P | Field mustard | cytosol | 39.47 | 45.0 |
| Bra039484.1-P | Field mustard | cytosol | 38.6 | 44.44 |
| Bra035393.1-P | Field mustard | cytosol | 37.28 | 42.71 |
| Bra002134.1-P | Field mustard | cytosol | 25.0 | 30.16 |
| Bra006439.1-P | Field mustard | cytosol | 25.88 | 27.06 |
| Bra023664.1-P | Field mustard | cytosol | 25.88 | 26.34 |
Protein Annotations
| MapMan:17.4.2.3.1 | Gene3D:3.30.760.10 | ProteinID:AGG54045 | ProteinID:AGG54045.1 | ProteinID:AGG54049 | ProteinID:AGG54049.1 |
| EnsemblPlantsGene:Bra013283 | EnsemblPlants:Bra013283.1 | EnsemblPlants:Bra013283.1-P | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023398 | EMBL:KC203458 | EMBL:KC203462 | UniProt:M4D9X3 |
| PFAM:PF01652 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF12 | SUPFAM:SSF55418 | InterPro:TIF_eIF4e-like |
| InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI0001DE110D | : | : | : |
Description
AT4G18040 (E=5e-101) EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor
Coordinates
chrA01:-:4729286..4730438
Molecular Weight (calculated)
25790.7 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.685
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEDTLKPN VATEESNPNS ADHPIDRYHE EGDDAEEGAT VDESSKSAVP ESHPLEHSWT LWFDNPSVKS KQTTWGSSLR SVFTFSTVEE FWSLYNNIRH
101: PSKLANGADL YCFKHNIEPK WEDPICANGG KWTMNFSREK SDKPFLYTLL ALIGEQFDHG DEICGVVVNV RAKQERISIW TKNSSNEAAQ VSIGRQWKEF
201: LDYNSSIGFI IHEDAKKLDR GAKSAYTA
101: PSKLANGADL YCFKHNIEPK WEDPICANGG KWTMNFSREK SDKPFLYTLL ALIGEQFDHG DEICGVVVNV RAKQERISIW TKNSSNEAAQ VSIGRQWKEF
201: LDYNSSIGFI IHEDAKKLDR GAKSAYTA
001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA
Arabidopsis Description
EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.