Factsheet for Bra012622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022374.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18040.1	Bra022374.1-P	AT4G01580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01513	Canola	extracellular	69.47	95.79
CDX90426	Canola	cytosol	67.18	95.65
AT4G18040.1	Thale cress	cytosol	93.13	51.91
Bra021026.1-P	Field mustard	cytosol	91.6	51.28
Bra013283.1-P	Field mustard	cytosol	87.02	50.0
KRH21134	Soybean	cytosol	78.63	43.46
TraesCS3D01G527800.1	Wheat	cytosol, golgi	69.47	42.33
TraesCS3B01G591300.1	Wheat	cytosol	69.47	42.33
TraesCS3A01G521500.1	Wheat	cytosol	69.47	42.33
HORVU3Hr1G113940.2	Barley	cytosol	69.47	42.33
Zm00001d041682_P001	Maize	cytosol, extracellular	70.23	42.2
VIT_10s0003g02250.t01	Wine grape	cytosol	75.57	41.95
Zm00001d041973_P001	Maize	cytosol	70.23	41.82
EES02138	Sorghum	cytosol	69.47	41.36
Solyc03g005870.2.1	Tomato	cytosol, nucleus	71.76	40.69
Os01t0970400-01	Rice	cytosol	70.23	40.53
PGSC0003DMT400034911	Potato	cytosol	70.99	40.26
GSMUA_Achr3P02580_001	Banana	cytosol	67.18	38.43
Solyc02g021550.2.1	Tomato	cytosol	51.15	36.22
GSMUA_Achr4P12820_001	Banana	cytosol	67.18	35.77
Bra030147.1-P	Field mustard	cytosol	65.65	35.25
Bra032325.1-P	Field mustard	cytosol	64.12	33.87
KRH11115	Soybean	cytosol	59.54	33.33
Bra039484.1-P	Field mustard	cytosol	48.85	32.32
Bra035393.1-P	Field mustard	cytosol	48.85	32.16
Bra035531.1-P	Field mustard	cytosol	47.33	31.0
Bra002134.1-P	Field mustard	cytosol	29.77	20.63
Bra006439.1-P	Field mustard	cytosol	32.06	19.27
Bra023664.1-P	Field mustard	cytosol	30.53	17.86

Protein Annotations

Gene3D:3.30.760.10	MapMan:35.1	EnsemblPlantsGene:Bra012622	EnsemblPlants:Bra012622.1	EnsemblPlants:Bra012622.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	UniProt:M4D812
PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like
InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI0002540A15	:	:	:

Description

AT4G18040 (E=5e-071) EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor

Coordinates

chrA03:-:23156385..23157043

Molecular Weight (calculated)

15082.7 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.708

Length

131 amino acids

Sequence
(BLAST)

001: MRGPSKLTHG ADFYCFKHNI EPKWEDPICA NGGKWTMNFP KEKSDKSWLY TLLALIGEQF DHGDEICGAV VNIREKQERI SIWTKNASNE ATQVSIGRQW
101: KEFLDYNNSI GFIIHEDAKK LDRNAKDAYT A

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.