Factsheet for Bra021026.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022374.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18040.1	Bra022374.1-P	AT4G01580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76547	Canola	cytosol	99.15	99.15
Bra012622.1-P	Field mustard	cytosol	51.28	91.6
AT4G18040.1	Thale cress	cytosol	88.46	88.09
Bra013283.1-P	Field mustard	cytosol	84.62	86.84
KRH21134	Soybean	cytosol	63.68	62.87
VIT_10s0003g02250.t01	Wine grape	cytosol	61.97	61.44
Zm00001d041682_P001	Maize	cytosol, extracellular	56.84	61.01
EES02138	Sorghum	cytosol	56.41	60.0
Solyc02g021550.2.1	Tomato	cytosol	47.44	60.0
Zm00001d041973_P001	Maize	cytosol	55.98	59.55
Os01t0970400-01	Rice	cytosol	56.84	58.59
TraesCS3A01G521500.1	Wheat	cytosol	53.42	58.14
TraesCS3B01G591300.1	Wheat	cytosol	53.42	58.14
HORVU3Hr1G113940.2	Barley	cytosol	53.42	58.14
TraesCS3D01G527800.1	Wheat	cytosol, golgi	53.42	58.14
Solyc03g005870.2.1	Tomato	cytosol, nucleus	57.27	58.01
PGSC0003DMT400034911	Potato	cytosol	55.98	56.71
GSMUA_Achr3P02580_001	Banana	cytosol	53.85	55.02
GSMUA_Achr4P12820_001	Banana	cytosol	54.7	52.03
KRH11115	Soybean	cytosol	51.71	51.71
Bra030147.1-P	Field mustard	cytosol	52.56	50.41
Bra032325.1-P	Field mustard	cytosol	52.56	49.6
Bra035531.1-P	Field mustard	cytosol	38.03	44.5
Bra039484.1-P	Field mustard	cytosol	37.61	44.44
Bra035393.1-P	Field mustard	cytosol	36.32	42.71
Bra002134.1-P	Field mustard	cytosol	23.5	29.1
Bra006439.1-P	Field mustard	cytosol	24.79	26.61
Bra023664.1-P	Field mustard	cytosol	24.36	25.45

Protein Annotations

MapMan:17.4.2.3.1	Gene3D:3.30.760.10	ProteinID:AGI37649	ProteinID:AGI37649.1	ProteinID:AGI37650	ProteinID:AGI37650.1
ProteinID:AGI37651	ProteinID:AGI37651.1	ProteinID:AGI37652	ProteinID:AGI37652.1	ProteinID:AGI37653	ProteinID:AGI37653.1
EnsemblPlantsGene:Bra021026	EnsemblPlants:Bra021026.1	EnsemblPlants:Bra021026.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023398	EMBL:KC431004	EMBL:KC431005	EMBL:KC431006
EMBL:KC431007	EMBL:KC431008	UniProt:M4DWY0	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960
PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI000254727F
SEG:seg	:	:	:	:	:

Description

AT4G18040 (E=2e-107) EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap binding / protein binding / translation initiation factor

Coordinates

chrA08:-:10401169..10402741

Molecular Weight (calculated)

26178.2 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.670

Length

234 amino acids

Sequence
(BLAST)

001: MAVEDTSKPV VVAEEANPNP TDHPIDRYHE EGDDTEEGEI AGGEGDGDES SKSAVPQSHP LEHSWTFWFD NPSVKLKQAT WGSSLRSVFT FSTVEEFWSL
101: FNNMKGPSKL AGGADFYCFK HNIEPKWEDP ICANGGKWTM NFPKEKSDKP WLYTLLALIG EQFDHGDEIC GAVVNVRGKQ ERISIWTKNA SNEAAQVSIG
201: KQWKEFIDYN NSIGFIIHED AKKLDRGAKS AYTA

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.