CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012622.1-P	Field mustard	cytosol	43.46	78.63
CDX90426	Canola	cytosol	30.38	78.26
CDY01513	Canola	extracellular	31.22	77.89
VIT_10s0003g02250.t01	Wine grape	cytosol	69.2	69.49
Zm00001d041682_P001	Maize	cytosol, extracellular	62.87	68.35
EES02138	Sorghum	cytosol	61.18	65.91
Zm00001d041973_P001	Maize	cytosol	61.18	65.91
AT4G18040.1	Thale cress	cytosol	64.98	65.53
KRH11115	Soybean	cytosol	64.56	65.38
Os01t0970400-01	Rice	cytosol	62.45	65.2
TraesCS3A01G521500.1	Wheat	cytosol	58.65	64.65
TraesCS3B01G591300.1	Wheat	cytosol	58.65	64.65
TraesCS3D01G527800.1	Wheat	cytosol, golgi	58.65	64.65
Solyc03g005870.2.1	Tomato	cytosol, nucleus	62.87	64.5
CDY61674	Canola	cytosol	62.03	64.47
CDX76547	Canola	cytosol	63.29	64.1
Solyc02g021550.2.1	Tomato	cytosol	49.79	63.78
HORVU3Hr1G113940.2	Barley	cytosol	57.81	63.72
Bra021026.1-P	Field mustard	cytosol	62.87	63.68
Bra013283.1-P	Field mustard	cytosol	60.76	63.16
CDX78824	Canola	cytosol	60.76	63.16
CDY08883	Canola	cytosol	61.6	62.39
GSMUA_Achr3P02580_001	Banana	cytosol	59.92	62.01
PGSC0003DMT400034911	Potato	cytosol	59.49	61.04
AT1G29590.1	Thale cress	cytosol	54.43	53.75
GSMUA_Achr4P12820_001	Banana	cytosol	55.27	53.25
AT1G29550.1	Thale cress	cytosol	53.59	52.92
CDX99836	Canola	cytosol	53.59	51.21
CDY44305	Canola	cytosol	52.32	50.82
Bra030147.1-P	Field mustard	cytosol	52.32	50.82
CDX94676	Canola	cytosol	52.32	50.41
Bra032325.1-P	Field mustard	cytosol	51.9	49.6
CDY48345	Canola	cytosol	51.05	48.79
KRG90357	Soybean	endoplasmic reticulum	40.08	47.5
KRH33614	Soybean	cytosol	39.66	45.85
KRH70165	Soybean	cytosol	24.89	25.43
KRH08499	Soybean	cytosol	24.89	25.11

Protein Annotations

EntrezGene:100499636	MapMan:17.4.2.3.1	Gene3D:3.30.760.10	EMBL:ACUP02008340	UniProt:C6ZJZ3	EMBL:EU912426
EnsemblPlantsGene:GLYMA_13G222400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR023398	EnsemblPlants:KRH21134	ProteinID:KRH21134	ProteinID:KRH21134.1	PFAM:PF01652	ScanProsite:PS00813
PANTHER:PTHR11960	PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS
UniParc:UPI0001B06DFA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33528639..33531238

Molecular Weight (calculated)

26762.9 Da

IEP (calculated)

4.715

GRAVY (calculated)

-0.669

Length

237 amino acids

Sequence
(BLAST)

001: MVVEDTQKSV ITEDQYPSRV VSDNNNDDDD DDLEEGEIPV DGEDSGATAT TKPPAALARN PHPLENSWTF WFDNPSSKSK QAAWGSSIRP IYTFATVEEF
101: WSIYNNIHHP SKLGLGADFH CFKHKIEPKW EDPICANGGK WTMTFPRGKS DTSWLYTLLA MIGEQFDHGD EICGAVVNVR SRQDKIAIWT KNASNEAAQV
201: SIGKQWKEFL DYNDTIGFIF HEDAKKLDRG AKNKYVV

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.