Factsheet for Zm00001d041682_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041973_P001	Maize	cytosol	83.94	83.18
Os01t0970400-01	Rice	cytosol	79.82	76.65
TraesCS3D01G527800.1	Wheat	cytosol, golgi	73.39	74.42
TraesCS3A01G521500.1	Wheat	cytosol	73.39	74.42
TraesCS3B01G591300.1	Wheat	cytosol	72.94	73.95
CDX90426	Canola	cytosol	30.28	71.74
HORVU3Hr1G113940.2	Barley	cytosol	70.18	71.16
Bra012622.1-P	Field mustard	cytosol	42.2	70.23
CDY01513	Canola	extracellular	30.28	69.47
GSMUA_Achr3P02580_001	Banana	cytosol	68.35	65.07
Solyc02g021550.2.1	Tomato	cytosol	54.13	63.78
KRH21134	Soybean	cytosol	68.35	62.87
PGSC0003DMT400034911	Potato	cytosol	64.68	61.04
VIT_10s0003g02250.t01	Wine grape	cytosol	66.06	61.02
CDY61674	Canola	cytosol	61.01	58.33
AT4G18040.1	Thale cress	cytosol	62.39	57.87
Bra013283.1-P	Field mustard	cytosol	60.09	57.46
CDX78824	Canola	cytosol	60.09	57.46
GSMUA_Achr4P12820_001	Banana	cytosol	64.68	57.32
Bra021026.1-P	Field mustard	cytosol	61.01	56.84
CDX76547	Canola	cytosol	60.55	56.41
CDY08883	Canola	cytosol	60.09	55.98
KRH11115	Soybean	cytosol	56.88	52.99
AT1G29590.1	Thale cress	cytosol	54.59	49.58
AT1G29550.1	Thale cress	cytosol	54.13	49.17
CDY44305	Canola	cytosol	51.38	45.9
Bra030147.1-P	Field mustard	cytosol	50.92	45.49
Zm00001d032775_P002	Maize	cytosol, extracellular	43.58	45.24
CDX94676	Canola	cytosol	50.92	45.12
CDX99836	Canola	cytosol	50.92	44.76
Zm00001d014065_P001	Maize	cytosol, extracellular	43.58	43.98
Bra032325.1-P	Field mustard	cytosol	49.08	43.15
CDY48345	Canola	cytosol	48.17	42.34
Zm00001d028515_P001	Maize	cytosol	29.82	28.38

Protein Annotations

EntrezGene:100381286	MapMan:17.4.2.3.1	Gene3D:3.30.760.10	UniProt:B4G0T4	EMBL:BT042972	EMBL:BT043330
GO:GO:0000340	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005845
GO:GO:0006412	GO:GO:0006413	GO:GO:0006417	GO:GO:0006950	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0031370
GO:GO:0034059	InterPro:IPR023398	ProteinID:ONM33473.1	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960
PANTHER:PTHR11960:SF12	SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00017B7753
EnsemblPlantsGene:Zm00001d041682	EnsemblPlants:Zm00001d041682_P001	EnsemblPlants:Zm00001d041682_T001	:	:	:

Description

eucaryotic initiation factor6 eucaryotic initiation factor6

Coordinates

chr3:+:133075625..133080137

Molecular Weight (calculated)

24456.5 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.627

Length

218 amino acids

Sequence
(BLAST)

001: MAEETDTRPA SAGSRGRPAP EDDDREEGEI TDLACAPSPP ATHPLEHSWT FWFDNPQSKS KQAAWGSSIR PIHTFSTVEE FWGLYNNINH PSKLIVGADF
101: HCFKNKIEPK WEDPICANGG KWTISCGRGK SDTFWLHTLL AMIGEQFDYG DEICGAVVSV RGKQERIAIW TKNAANEAAQ VSIGKQWKEL LDYKDSIGFI
201: VHDDAKKMDK GLKNRYTV

Best Arabidopsis Sequence Match ( AT4G18040.1 )
(BLAST)

001: MAVEDTPKSV VTEEAKPNSI ENPIDRYHEE GDDAEEGEIA GGEGDGNVDE SSKSGVPESH PLEHSWTFWF DNPAVKSKQT SWGSSLRPVF TFSTVEEFWS
101: LYNNMKHPSK LAHGADFYCF KHIIEPKWED PICANGGKWT MTFPKEKSDK SWLYTLLALI GEQFDHGDEI CGAVVNIRGK QERISIWTKN ASNEAAQVSI
201: GKQWKEFLDY NNSIGFIIHE DAKKLDRNAK NAYTA

Arabidopsis Description

EIF4E1eIF4E1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.