Factsheet for Zm00001d028515_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003147_P001
Zm00001d015852_P004
Zm00001d025777_P007
Zm00001d031449_P001
Zm00001d053675_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	Zm00001d015852_P004	AT3G45140.1	11117257
AT5G18110.1	Zm00001d031449_P001	AT3G45140.1	11117257
AT5G18110.1	Zm00001d053675_P001	AT3G45140.1	11117257
AT5G18110.1	Zm00001d003147_P001	AT5G57870.1	21798944
AT5G18110.1	Zm00001d025777_P007	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92511	Sorghum	cytosol	96.07	96.07
Os03t0262400-01	Rice	cytosol	80.35	81.06
TraesCS4D01G216800.1	Wheat	cytosol	81.66	80.6
TraesCS4B01G216300.1	Wheat	cytosol	81.22	80.17
HORVU4Hr1G061500.4	Barley	cytosol	81.22	80.17
TraesCS4A01G087900.1	Wheat	cytosol	80.79	79.74
GSMUA_Achr4P11110_001	Banana	cytosol	76.42	77.43
GSMUA_Achr3P29580_001	Banana	cytosol	72.93	73.89
VIT_08s0007g07290.t01	Wine grape	cytosol	71.62	72.89
PGSC0003DMT400060836	Potato	cytosol	70.74	72.65
Bra006439.1-P	Field mustard	cytosol	69.0	72.48
CDX70795	Canola	cytosol	68.56	72.02
KRH70165	Soybean	cytosol	72.93	71.98
Solyc10g080660.1.1	Tomato	cytosol, nucleus	69.87	71.75
CDX78777	Canola	cytosol	68.12	71.56
KRH08499	Soybean	cytosol	73.36	71.49
AT5G18110.1	Thale cress	cytosol	67.25	69.68
CDY38487	Canola	cytosol	64.63	69.16
Bra023664.1-P	Field mustard	cytosol	65.94	67.41
CDY49143	Canola	cytosol	65.5	66.96
CDY53257	Canola	cytosol	65.5	66.96
CDY45630	Canola	cytosol	65.5	66.96
CDY02645	Canola	cytosol	65.5	66.96
Bra002134.1-P	Field mustard	cytosol	50.22	60.85
HORVU2Hr1G094490.1	Barley	plastid	38.43	53.66
Zm00001d032775_P002	Maize	cytosol, extracellular	29.26	31.9
Zm00001d041682_P001	Maize	cytosol, extracellular	28.38	29.82
Zm00001d014065_P001	Maize	cytosol, extracellular	27.51	29.17
Zm00001d041973_P001	Maize	cytosol	26.64	27.73

Protein Annotations

EntrezGene:100193783	MapMan:17.4.2.6	Gene3D:3.30.760.10	UniProt:B4FGA3	EMBL:BT036141	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR023398	ProteinID:ONL96254.1	PFAM:PF01652	ScanProsite:PS00813	PANTHER:PTHR11960	PANTHER:PTHR11960:SF18
SUPFAM:SSF55418	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E	InterPro:TIF_eIF_4E_CS	UniParc:UPI00017B7241	EnsemblPlantsGene:Zm00001d028515
EnsemblPlants:Zm00001d028515_P001	EnsemblPlants:Zm00001d028515_T001	SEG:seg	:	:	:

Description

Eukaryotic translation initiation factor NCBP

Coordinates

chr1:-:37916605..37927253

Molecular Weight (calculated)

26543.0 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.790

Length

229 amino acids

Sequence
(BLAST)

001: MEAAAENKEA EQEQQQLPHA RKDNAPAAAE EDEADSEETE RRNRDLKSGL HPLRHKLVLW YTRRTPGARS QSYEDNIKKI IDFSTVESFW VCYCHLARPS
101: SLPSPTDLHL FKDGIRPLWE DPANQNGGKW IIRFKKAVSG RFWEDLVLVV VGDQLEYSDD VCGVVLSVRF NEDILSVWNR NASDHQAVMA LRDSIKRHLK
201: LPHSYLMEYK PHDASRRDNS SYRNTWLRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.