Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02645 | Canola | cytosol | 86.88 | 85.71 |
| Bra023664.1-P | Field mustard | cytosol | 86.43 | 85.27 |
| CDY45630 | Canola | cytosol | 86.43 | 85.27 |
| CDY49143 | Canola | cytosol | 86.43 | 85.27 |
| CDY53257 | Canola | cytosol | 86.43 | 85.27 |
| CDY38487 | Canola | cytosol | 80.54 | 83.18 |
| Bra006439.1-P | Field mustard | cytosol | 80.54 | 81.65 |
| CDX70795 | Canola | cytosol | 80.54 | 81.65 |
| CDX78777 | Canola | cytosol | 79.64 | 80.73 |
| Bra002134.1-P | Field mustard | cytosol | 66.52 | 77.78 |
| VIT_08s0007g07290.t01 | Wine grape | cytosol | 73.76 | 72.44 |
| KRH70165 | Soybean | cytosol | 75.57 | 71.98 |
| GSMUA_Achr4P11110_001 | Banana | cytosol | 72.85 | 71.24 |
| KRH08499 | Soybean | cytosol | 75.57 | 71.06 |
| PGSC0003DMT400060836 | Potato | cytosol | 71.49 | 70.85 |
| Solyc10g080660.1.1 | Tomato | cytosol, nucleus | 71.04 | 70.4 |
| GSMUA_Achr3P29580_001 | Banana | cytosol | 70.59 | 69.03 |
| Os03t0262400-01 | Rice | cytosol | 70.14 | 68.28 |
| Zm00001d028515_P001 | Maize | cytosol | 69.68 | 67.25 |
| EER92511 | Sorghum | cytosol | 69.68 | 67.25 |
| HORVU4Hr1G061500.4 | Barley | cytosol | 70.14 | 66.81 |
| TraesCS4A01G087900.1 | Wheat | cytosol | 70.14 | 66.81 |
| TraesCS4D01G216800.1 | Wheat | cytosol | 70.14 | 66.81 |
| TraesCS4B01G216300.1 | Wheat | cytosol | 69.68 | 66.38 |
| HORVU2Hr1G094490.1 | Barley | plastid | 34.39 | 46.34 |
| AT5G35620.1 | Thale cress | cytosol | 25.34 | 28.28 |
| AT4G18040.1 | Thale cress | cytosol | 27.6 | 25.96 |
| AT1G29550.1 | Thale cress | cytosol | 25.79 | 23.75 |
| AT1G29590.1 | Thale cress | cytosol | 24.89 | 22.92 |
Protein Annotations
| MapMan:17.4.2.6 | Gene3D:3.30.760.10 | EntrezGene:831929 | ProteinID:AED92508.1 | EMBL:AF028809 | ArrayExpress:AT5G18110 |
| EnsemblPlantsGene:AT5G18110 | RefSeq:AT5G18110 | TAIR:AT5G18110 | RefSeq:AT5G18110-TAIR-G | EnsemblPlants:AT5G18110.1 | TAIR:AT5G18110.1 |
| EMBL:AY092964 | EMBL:AY093208 | EMBL:AY114562 | Unigene:At.7547 | ProteinID:BAB09469.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006417 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR023398 | Symbol:NCBP | RefSeq:NP_197312.1 | PFAM:PF01652 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00813 | PANTHER:PTHR11960 | PANTHER:PTHR11960:SF18 | UniProt:Q9FK59 | SUPFAM:SSF55418 |
| InterPro:TIF_eIF4e-like | InterPro:TIF_eIF_4E | InterPro:TIF_eIF_4E_CS | UniParc:UPI000009CC9A | : | : |
Description
NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
Coordinates
chr5:-:5988744..5990681
Molecular Weight (calculated)
25746.2 Da
IEP (calculated)
6.948
GRAVY (calculated)
-0.645
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.