Factsheet for VIT_08s0007g07290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06770.t01
VIT_11s0037g00490.t01
VIT_13s0064g01480.t01
VIT_13s0064g01490.t01
VIT_13s0064g01500.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18110.1	VIT_13s0064g01480.t01	AT3G45140.1	11117257
AT5G18110.1	VIT_13s0064g01490.t01	AT3G45140.1	11117257
AT5G18110.1	VIT_13s0064g01500.t01	AT3G45140.1	11117257
AT5G18110.1	VIT_04s0008g06770.t01	AT5G57870.1	21798944
AT5G18110.1	VIT_11s0037g00490.t01	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060836	Potato	cytosol	82.67	83.41
Solyc10g080660.1.1	Tomato	cytosol, nucleus	81.33	82.06
KRH70165	Soybean	cytosol	82.67	80.17
KRH08499	Soybean	cytosol	82.67	79.15
GSMUA_Achr4P11110_001	Banana	cytosol	78.22	77.88
GSMUA_Achr3P29580_001	Banana	cytosol	77.78	77.43
Bra006439.1-P	Field mustard	cytosol	73.78	76.15
CDX70795	Canola	cytosol	73.33	75.69
CDY38487	Canola	cytosol	71.56	75.23
CDX78777	Canola	cytosol	72.89	75.23
AT5G18110.1	Thale cress	cytosol	72.44	73.76
HORVU4Hr1G061500.4	Barley	cytosol	75.56	73.28
TraesCS4D01G216800.1	Wheat	cytosol	75.11	72.84
Os03t0262400-01	Rice	cytosol	73.33	72.69
TraesCS4B01G216300.1	Wheat	cytosol	74.67	72.41
TraesCS4A01G087900.1	Wheat	cytosol	74.67	72.41
EER92511	Sorghum	cytosol	73.33	72.05
Zm00001d028515_P001	Maize	cytosol	72.89	71.62
CDY02645	Canola	cytosol	70.22	70.54
Bra023664.1-P	Field mustard	cytosol	70.22	70.54
CDY53257	Canola	cytosol	69.78	70.09
CDY49143	Canola	cytosol	69.78	70.09
CDY45630	Canola	cytosol	69.78	70.09
Bra002134.1-P	Field mustard	cytosol	55.56	66.14
HORVU2Hr1G094490.1	Barley	plastid	36.89	50.61
VIT_05s0049g01770.t01	Wine grape	cytosol	26.22	28.92
VIT_10s0003g02250.t01	Wine grape	cytosol	27.11	25.85

Protein Annotations

EntrezGene:100258939	wikigene:100258939	MapMan:17.4.2.6	Gene3D:3.30.760.10	ProteinID:CBI29949	ProteinID:CBI29949.3
UniProt:D7TI73	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023398	EntrezGene:LOC100258939	wikigene:LOC100258939	PFAM:PF01652	ScanProsite:PS00813
PANTHER:PTHR11960	PANTHER:PTHR11960:SF18	SUPFAM:SSF55418	TIGR:TC52724	InterPro:TIF_eIF4e-like	InterPro:TIF_eIF_4E
InterPro:TIF_eIF_4E_CS	UniParc:UPI00015CA6C6	ArrayExpress:VIT_08s0007g07290	EnsemblPlantsGene:VIT_08s0007g07290	EnsemblPlants:VIT_08s0007g07290.t01	RefSeq:XP_002281697
RefSeq:XP_002281697.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:20892805..20898244

Molecular Weight (calculated)

25929.7 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.588

Length

225 amino acids

Sequence
(BLAST)

001: MEITEKKEAE SKGLNPQSVT EATSFNSDKE AEDRERQARD LKAGLHPLKH KFVFWYTRRT PGVRTQTSYE DNIKKIVDFS TVEGFWICYC HLARPSALPS
101: PTDLHLFKEG IRPLWEDSAN CNGGKWIIRF KKVVSGRFWE DLVLALVGDQ LDYGDNICGA VLSIRFNEDI LSVWNRNASD HQAVMALRDA IKRHLKLPHG
201: YVMEYKAHDA SLRDNSSYRN TWLRG

Best Arabidopsis Sequence Match ( AT5G18110.1 )
(BLAST)

001: MEVLDRRDDE IRDSGNMDSI KSHYVTDSVS EERRSRELKD GDHPLRYKFS IWYTRRTPGV RNQSYEDNIK KMVEFSTVEG FWACYCHLAR SSLLPSPTDL
101: HFFKDGIRPL WEDGANCNGG KWIIRFSKVV SARFWEDLLL ALVGDQLDDA DNICGAVLSV RFNEDIISVW NRNASDHQAV MGLRDSIKRH LKLPHAYVME
201: YKPHDASLRD NSSYRNTWLR G

Arabidopsis Description

NCBPEukaryotic translation initiation factor NCBP [Source:UniProtKB/Swiss-Prot;Acc:Q9FK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.