Factsheet for VIT_13s0064g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g01770.t01
VIT_08s0007g07290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	VIT_08s0007g07290.t01	AT5G18110.1	11117257
AT3G45140.1	VIT_05s0049g01770.t01	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g01500.t01	Wine grape	cytosol	27.24	98.4
VIT_13s0064g01490.t01	Wine grape	cytosol	40.86	92.48
Os12t0559934-00	Rice	cytosol	15.95	73.85
CDY61034	Canola	cytosol	35.44	71.59
CDY07409	Canola	cytosol	30.34	70.8
CDY72550	Canola	cytosol	25.03	70.41
VIT_06s0004g01500.t01	Wine grape	cytosol	61.46	70.16
VIT_06s0004g01480.t01	Wine grape	cytosol	61.02	69.48
HORVU3Hr1G047210.1	Barley	cytosol	16.06	66.82
VIT_06s0004g01510.t01	Wine grape	plastid	65.23	65.37
CDY61881	Canola	cytosol	25.58	65.07
GSMUA_Achr3P11780_001	Banana	plastid	60.24	64.3
CDY70843	Canola	cytosol	8.97	64.29
VIT_06s0004g01460.t01	Wine grape	plastid	42.41	64.05
VIT_06s0004g01470.t01	Wine grape	cytosol	64.01	64.01
GSMUA_Achr9P12470_001	Banana	plastid	57.81	61.92
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	56.48	59.37
CDY04196	Canola	plastid	57.7	58.61
OQU80925	Sorghum	cytosol	55.81	58.27
AT3G45140.1	Thale cress	plastid	57.59	58.04
Bra004057.1-P	Field mustard	cytosol	57.14	57.91
CDX91565	Canola	plastid	57.7	57.89
Bra004059.1-P	Field mustard	plastid	54.93	57.27
HORVU7Hr1G050680.1	Barley	peroxisome	43.3	57.16
TraesCS7D01G029400.1	Wheat	cytosol	16.72	56.98
CDX79416	Canola	plastid	56.92	56.86
CDX67920	Canola	plastid	56.92	56.86
Bra003526.1-P	Field mustard	plastid	56.81	56.75
Zm00001d053675_P001	Maize	plastid	56.81	56.69
CDY16339	Canola	plastid	47.62	56.5
Bra004060.1-P	Field mustard	plastid	56.04	56.28
HORVU6Hr1G033600.1	Barley	plastid	55.81	56.25
Zm00001d015852_P004	Maize	plastid	56.7	56.2
CDY61036	Canola	plastid	55.15	56.02
TraesCS4D01G347300.1	Wheat	cytosol	54.82	55.93
TraesCS6B01G193400.1	Wheat	plastid	55.7	55.83
KXG29701	Sorghum	plastid	56.59	55.73
TraesCS6A01G166000.1	Wheat	golgi	55.48	55.6
Bra022535.1-P	Field mustard	plastid	49.83	55.49
TraesCS6D01G154600.1	Wheat	plastid	55.26	55.38
TraesCS7D01G244800.1	Wheat	plastid	57.03	55.26
TraesCS7A01G246200.1	Wheat	plastid	56.92	55.21
TraesCS7B01G145200.1	Wheat	plastid	56.59	55.06
Os08t0508800-01	Rice	nucleus, plasma membrane	56.26	54.98
Os02t0194700-01	Rice	plasma membrane	56.26	54.86
VIT_00s0265g00170.t01	Wine grape	cytosol	30.56	54.65
Os08t0509100-01	Rice	nucleus	56.59	54.3
TraesCS6B01G014400.1	Wheat	cytosol	35.77	53.74
TraesCS7A01G034900.1	Wheat	mitochondrion	17.28	53.24
Zm00001d031449_P001	Maize	mitochondrion	56.04	52.93
TraesCS5D01G013400.1	Wheat	plastid	52.49	51.08
TraesCS5B01G006500.1	Wheat	plastid	52.38	50.97
HORVU7Hr1G006320.4	Barley	plastid	52.27	50.92
TraesCS5A01G007900.1	Wheat	plastid	52.27	50.86
HORVU5Hr1G001180.1	Barley	plastid	52.38	50.81
CDY61880	Canola	plastid	30.34	49.73
Os12t0559200-01	Rice	plastid	50.06	49.02
HORVU6Hr1G000510.1	Barley	plastid	50.17	48.61
VIT_01s0010g02750.t01	Wine grape	plastid	49.39	48.48
TraesCS6D01G010100.1	Wheat	plastid	50.28	48.35
Bra004058.1-P	Field mustard	plastid	56.59	48.3
TraesCS5D01G041100.1	Wheat	plastid	50.39	48.15
CDY07407	Canola	cytosol, plastid	57.92	47.68
Os12t0560200-00	Rice	cytosol	5.2	47.47
TraesCS5B01G033000.1	Wheat	plastid	49.5	47.05
VIT_09s0002g01080.t01	Wine grape	cytosol	47.07	45.85
CDY70245	Canola	plastid	23.03	45.41
VIT_14s0128g00780.t01	Wine grape	cytosol	42.97	45.17
CDY07408	Canola	plastid	22.59	44.54
VIT_06s0004g01580.t01	Wine grape	cytosol	16.5	44.48
VIT_14s0128g00790.t01	Wine grape	cytosol	42.3	43.96
TraesCS5A01G032800.1	Wheat	mitochondrion	40.53	42.61
VIT_05s0020g03170.t01	Wine grape	cytosol	41.09	42.35
CDY70606	Canola	plastid	18.38	42.03
CDY61882	Canola	plastid	17.5	40.83
VIT_07s0141g00340.t01	Wine grape	cytosol, plastid	27.35	38.71
VIT_07s0289g00010.t01	Wine grape	cytosol	18.94	35.85

Protein Annotations

Gene3D:1.20.245.10	EntrezGene:100257867	wikigene:100257867	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60
Gene3D:4.10.372.10	Gene3D:4.10.375.10	ProteinID:CCB49475	ProteinID:CCB49475.1	UniProt:F6HB91	EMBL:FN595509
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	EntrezGene:LOC100257867	wikigene:LOC100257867	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI00015CE698	ArrayExpress:VIT_13s0064g01480	EnsemblPlantsGene:VIT_13s0064g01480	EnsemblPlants:VIT_13s0064g01480.t01	unigene:Vvi.25665
RefSeq:XP_002263854	RefSeq:XP_002263854.1	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:F6HB91]

Coordinates

chr13:+:23367020..23371935

Molecular Weight (calculated)

102258.0 Da

IEP (calculated)

6.464

GRAVY (calculated)

-0.355

Length

903 amino acids

Sequence
(BLAST)

001: MMMNASHYQL HRLNPTQSSS SLLHKPFILS HGRSISSPAY LPSRTTLNFH GKKKCFCIRA SATDVRGVET SKENAASVKA VVRAAAAGLL SDLGITKPLD
101: VYADLVGKTL LLELVSAEVD SGTGLEKGTI KGYAHKVRHE KEEVVYESEF IVPAGFGEIG AILVENEHHK EMFINNIVLD GLHNGPIHIN CSSWVHSKFD
201: NPKKRIFFTN KSYLPDETPS GLTKLREMEL ENLRGNGKGE RKTSDRIYDY DTYNDLGDPD DSEDLARPII GGKDHPYPRR CRTGRPSSKK DPLSEKRTSS
301: VYVPRDEAFE EVKQMTFSTK TLKSVLHALL PQVEIMLLDP HLGFPYFTAI DSLFQEGVPL PKSKNFFQSI IPRLVKTIAE REGDILLFET PAMIDRDKFA
401: WFRDEEFSRQ ALAGLNPYSL QLVTEWPLKS ELDPEIYGPP ESLITAELIE KEIKGVMTID EALKQKKLFI LDYHDLLLPY VNKVREIEGT TLYGSRTLFF
501: LTMEGTLRPL AIELTRPPVG DKPQWKQVFT PGWDATSCWL WRLAKTHVCA HDSGYHQLVV HWLRTHCCTE PYIIAANRQL SAMHPIYRLL HPHLRYTMEI
601: NALARESLIN AGGIIESCFS PGKYAIELSS AAYDQLWRFD MEALPADLIR RGMAVEDPTA EHGLKLTIED YPFANDGLVL WDAIKQWVRD YVNHYYPDPS
701: LVESDKELQG WWTEVRTKGH ADKKDEPWWP VMKTPEDLIH VLTTIIWVTA GHHAAVNFGQ YVYAGYFPNR PTIARTNMPT EDPSDEEFKN FLHKPEIALL
801: KCFPSQIQAT KIMAVLDVLS SHSPDEEYLG DQMEPSWTEN PIIKAAFERF NGRLKELEGI IDGRNTNLNL KNRTGAGVVP YELLKPFSKP GVTGMGVPNS
901: ISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.