Factsheet for HORVU6Hr1G033600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G039260.2
HORVU2Hr1G094490.1
HORVU4Hr1G061500.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	HORVU2Hr1G094490.1	AT5G18110.1	11117257
AT3G45140.1	HORVU4Hr1G061500.4	AT5G18110.1	11117257
AT3G45140.1	HORVU1Hr1G039260.2	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G154600.1	Wheat	plastid	96.65	96.12
TraesCS6B01G193400.1	Wheat	plastid	96.54	96.0
TraesCS6A01G166000.1	Wheat	golgi	96.32	95.78
Os02t0194700-01	Rice	plasma membrane	75.67	73.22
Zm00001d053675_P001	Maize	plastid	73.77	73.04
KXG29701	Sorghum	plastid	73.1	71.43
Zm00001d015852_P004	Maize	plastid	72.21	71.02
VIT_13s0064g01500.t01	Wine grape	cytosol	17.97	64.4
HORVU3Hr1G047210.1	Barley	cytosol	15.51	64.06
Solyc01g009680.2.1	Tomato	plastid	30.92	62.53
CDY61034	Canola	cytosol	30.92	61.97
CDY07409	Canola	cytosol	26.23	60.72
CDY72550	Canola	cytosol	21.32	59.5
PGSC0003DMT400020118	Potato	cytosol	45.54	58.87
VIT_13s0064g01490.t01	Wine grape	cytosol	26.0	58.4
CDY70843	Canola	cytosol	8.04	57.14
VIT_06s0004g01500.t01	Wine grape	cytosol	49.78	56.38
VIT_06s0004g01480.t01	Wine grape	cytosol	49.89	56.37
KRH29668	Soybean	nucleus	56.58	55.96
KRH24671	Soybean	cytosol, plastid	57.03	55.91
VIT_13s0064g01480.t01	Wine grape	plastid	56.25	55.81
KRH29669	Soybean	plastid	56.03	55.72
VIT_06s0004g01510.t01	Wine grape	plastid	55.69	55.38
PGSC0003DMT400081909	Potato	plastid	55.36	55.17
CDY61881	Canola	cytosol	21.65	54.65
Solyc01g006540.2.1	Tomato	plastid	54.24	54.24
VIT_06s0004g01460.t01	Wine grape	plastid	35.83	53.68
Solyc01g006560.2.1	Tomato	plastid	53.46	53.1
KRG89889	Soybean	cytosol, plastid	50.67	52.79
Solyc12g011040.1.1	Tomato	nucleus, plastid	51.67	51.91
VIT_06s0004g01470.t01	Wine grape	cytosol	52.23	51.83
KRG89883	Soybean	cytosol, plastid	49.44	51.57
HORVU5Hr1G001180.1	Barley	plastid	53.46	51.45
HORVU7Hr1G050680.1	Barley	peroxisome	39.06	51.17
KRG89888	Soybean	nucleus	51.45	51.05
KRH17965	Soybean	plastid	52.23	50.98
HORVU7Hr1G006320.4	Barley	plastid	52.57	50.81
HORVU6Hr1G000510.1	Barley	plastid	52.68	50.64
CDX67920	Canola	plastid	50.33	49.89
CDX91565	Canola	plastid	50.11	49.89
CDY04196	Canola	plastid	49.44	49.83
Bra003526.1-P	Field mustard	plastid	50.22	49.78
AT3G45140.1	Thale cress	plastid	49.67	49.67
KRH18682	Soybean	cytosol, mitochondrion	50.33	49.51
CDX79416	Canola	plastid	49.89	49.45
CDY61036	Canola	plastid	49.0	49.38
Bra004059.1-P	Field mustard	plastid	47.66	49.31
Bra004057.1-P	Field mustard	cytosol	49.0	49.27
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	47.21	49.24
Bra004060.1-P	Field mustard	plastid	49.33	49.17
HORVU5Hr1G055110.2	Barley	mitochondrion	18.97	48.16
CDY16339	Canola	plastid	40.62	47.83
Bra022535.1-P	Field mustard	plastid	43.19	47.72
CDY61880	Canola	plastid	27.34	44.46
Bra004058.1-P	Field mustard	plastid	49.78	42.16
HORVU4Hr1G076570.6	Barley	cytosol, plastid	42.3	41.38
CDY07407	Canola	cytosol, plastid	49.78	40.66
HORVU1Hr1G054390.4	Barley	cytosol	37.72	40.05
HORVU5Hr1G093770.1	Barley	cytosol	38.28	39.75
CDY07408	Canola	plastid	19.87	38.86
HORVU4Hr1G005920.1	Barley	cytosol, plasma membrane	38.06	38.84
HORVU5Hr1G093700.3	Barley	cytosol, plasma membrane	37.39	38.77
CDY70245	Canola	plastid	19.75	38.65
HORVU5Hr1G054200.1	Barley	cytosol, mitochondrion	19.98	36.68
CDY70606	Canola	plastid	16.07	36.46
HORVU5Hr1G117110.1	Barley	cytosol	36.05	36.41
HORVU2Hr1G115980.2	Barley	plastid	34.93	35.49
CDY61882	Canola	plastid	15.29	35.4
HORVU2Hr1G115960.1	Barley	plastid	34.71	33.62

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
UniProt:A0A287TW92	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719
GO:GO:0009751	GO:GO:0009753	GO:GO:0009987	GO:GO:0010597	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G033600	EnsemblPlants:HORVU6Hr1G033600.1
InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS
InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477
InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711
PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484
SUPFAM:SSF49723	UniParc:UPI000B47D52C	SEG:seg	:	:	:

Description

Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A287TW92]

Coordinates

chrchr6H:+:154877863..154882095

Molecular Weight (calculated)

101389.0 Da

IEP (calculated)

6.207

GRAVY (calculated)

-0.427

Length

896 amino acids

Sequence
(BLAST)

001: MIHLKQPLVL SAQSSNVASP LFVAGGQQRR ASGAGRTCSG RRLSARRISC ASTEEAVGVS TSVTTKERAL TVTAIVTAQV PTSVYVARGL DDIQDLFGKT
101: LLLELVSSEL DPKTGRERER VKGFAHMTLK EGTYEAKMSV PASFGPVGAV LVENEHHREM FIKDIKLITG GDESTAITFD VASWVHSKFD DPEPRAFFTV
201: KSYLPSQTPP GIEALRKKEL ETLRGDGHSE RKFHERVYDY DTYNDLGDPD KNIDHKRPVL GTKEHPYPRR CRTGRPKTLY DPETETRSSP VYVPRDEQFS
301: DVKGRTFSAT TLRSGLHAIL PALAPLLNNS QCFSHFPAID ALYSDGIPLP VDGHGGNSFN VINDVIPRVV QMIEDTTEHV LRFEVPEMLE RDRFSWFRDE
401: EFARQTLAGL NPICIRRLTE FPIVSKLDPA VYGPAESALS KEILEKMMNG RMTVEEAMEK KRLFLLDYHD VFLPYVHRVR ELPDTTLYGS RTVFFLSDEG
501: TLMPLAIELT RPQSPTKPQW KRAFTHGSDA TESWLWKLAK AHVLTHDTGY HQLVSHWLRT HACVEPYIIA TNRQLSRMHP VYRLLHPHFR YTMEINALAR
601: EALINADGII EEAFWPGKYS IELSSVAYGA AWQFNTEALP EDLINRGLAV RRDDGELELA IKDYPYADDG LLIWGSIKQW ASDYVDFYYK SDGDVAGDEE
701: LRAWWEEVRT KGHADKKDEP WWPVCDTKEN LVQILTIIMW VTSGHHAAVN FGQYHYAGYF PNRPTVVRRN IPVEENRDDE MKKFMARPEE VLLQSLPSQM
801: QAIKVMATLD ILSSHSPDEE YMGEYAEPAW LAEPMVKAAF EKFSGRLKEA EGTIDMRNNN PENKNRCGAG IVPYELLKPF SEPGVTGRGI PNSISI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.