Factsheet for Bra004060.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002134.1-P
Bra006439.1-P
Bra023664.1-P
Bra035393.1-P
Bra035531.1-P
Bra039484.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	Bra002134.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra006439.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra023664.1-P	AT5G18110.1	11117257
AT3G45140.1	Bra035393.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra035531.1-P	AT5G35620.1	11117257
AT3G45140.1	Bra039484.1-P	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61036	Canola	plastid	97.44	98.54
Bra004059.1-P	Field mustard	plastid	83.54	86.72
Bra004057.1-P	Field mustard	cytosol	85.76	86.53
Bra003526.1-P	Field mustard	plastid	77.86	77.43
Bra022535.1-P	Field mustard	plastid	69.41	76.94
AT3G45140.1	Thale cress	plastid	73.97	74.22
Bra004058.1-P	Field mustard	plastid	85.54	72.68
Os12t0559934-00	Rice	cytosol	15.68	72.31
VIT_13s0064g01500.t01	Wine grape	cytosol	18.13	65.2
Solyc01g009680.2.1	Tomato	plastid	32.04	65.01
HORVU3Hr1G047210.1	Barley	cytosol	15.24	63.13
VIT_13s0064g01490.t01	Wine grape	cytosol	27.81	62.66
PGSC0003DMT400020118	Potato	cytosol	44.83	58.15
VIT_13s0064g01480.t01	Wine grape	plastid	56.28	56.04
KRH29669	Soybean	plastid	54.17	54.05
PGSC0003DMT400081909	Potato	plastid	53.62	53.62
Solyc01g006540.2.1	Tomato	plastid	53.17	53.35
GSMUA_Achr9P12470_001	Banana	plastid	49.72	53.02
Solyc01g006560.2.1	Tomato	plastid	53.06	52.88
GSMUA_Achr3P11780_001	Banana	plastid	49.61	52.72
KRG89883	Soybean	cytosol, plastid	50.28	52.62
KRH29668	Soybean	nucleus	52.84	52.43
KRH24671	Soybean	cytosol, plastid	53.17	52.3
OQU80925	Sorghum	cytosol	49.5	51.45
KRG89889	Soybean	cytosol, plastid	48.28	50.47
Solyc12g011040.1.1	Tomato	nucleus, plastid	49.83	50.22
Zm00001d053675_P001	Maize	plastid	50.5	50.17
HORVU7Hr1G050680.1	Barley	peroxisome	37.93	49.85
Os02t0194700-01	Rice	plasma membrane	51.28	49.78
Os08t0508800-01	Rice	nucleus, plasma membrane	51.06	49.68
Zm00001d015852_P004	Maize	plastid	50.28	49.62
KXG29701	Sorghum	plastid	50.5	49.51
TraesCS7D01G029400.1	Wheat	cytosol	14.57	49.43
HORVU6Hr1G033600.1	Barley	plastid	49.17	49.33
KRG89888	Soybean	nucleus	49.5	49.28
KRH17965	Soybean	plastid	50.28	49.24
KRH18682	Soybean	cytosol, mitochondrion	49.5	48.85
TraesCS6D01G154600.1	Wheat	plastid	48.83	48.72
TraesCS6A01G166000.1	Wheat	golgi	48.72	48.61
Os08t0509100-01	Rice	nucleus	50.72	48.46
TraesCS6B01G193400.1	Wheat	plastid	48.5	48.39
TraesCS4D01G347300.1	Wheat	cytosol	47.61	48.36
TraesCS6B01G014400.1	Wheat	cytosol	32.15	48.09
TraesCS7A01G034900.1	Wheat	mitochondrion	15.35	47.1
TraesCS7A01G246200.1	Wheat	plastid	48.61	46.94
TraesCS7D01G244800.1	Wheat	plastid	48.61	46.89
Zm00001d031449_P001	Maize	mitochondrion	49.72	46.76
TraesCS7B01G145200.1	Wheat	plastid	48.16	46.66
TraesCS5B01G006500.1	Wheat	plastid	46.72	45.26
TraesCS5D01G013400.1	Wheat	plastid	46.61	45.15
TraesCS5A01G007900.1	Wheat	plastid	46.61	45.15
Os12t0559200-01	Rice	plastid	46.16	45.01
HORVU5Hr1G001180.1	Barley	plastid	46.61	45.01
HORVU6Hr1G000510.1	Barley	plastid	45.49	43.88
TraesCS5D01G041100.1	Wheat	plastid	45.94	43.7
TraesCS5B01G033000.1	Wheat	plastid	46.16	43.68
Bra021322.1-P	Field mustard	cytosol	41.49	43.52
HORVU7Hr1G006320.4	Barley	plastid	44.61	43.26
TraesCS6D01G010100.1	Wheat	plastid	44.27	42.39
Bra004081.1-P	Field mustard	plastid	43.16	42.27
Bra033991.1-P	Field mustard	plastid	42.6	41.95
Bra008037.1-P	Field mustard	plastid	42.71	41.78
Os12t0560200-00	Rice	cytosol	4.56	41.41
Bra030988.1-P	Field mustard	cytosol, mitochondrion, plastid	42.27	41.35
Bra016602.1-P	Field mustard	cytosol	42.16	41.24
TraesCS5A01G032800.1	Wheat	mitochondrion	37.82	39.58
Bra039948.1-P	Field mustard	cytosol	38.82	39.35
Bra023829.1-P	Field mustard	cytosol	39.04	38.87

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
EnsemblPlantsGene:Bra004060	EnsemblPlants:Bra004060.1	EnsemblPlants:Bra004060.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C
InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	UniProt:M4CIM6
PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087	PRINTS:PR00468
ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771	PANTHER:PTHR11771:SF89
SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniParc:UPI0002541320	SEG:seg	:

Description

AT3G45140 (E=0.0) LOX2, ATLOX2 | LOX2 (LIPOXYGENASE 2); lipoxygenase

Coordinates

chrA07:+:16609630..16613582

Molecular Weight (calculated)

102466.0 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.467

Length

899 amino acids

Sequence
(BLAST)

001: MFCREASSSL QTLSIANSLS SQFTKPSALI NSLAAGHRYK LCPRPDLKGR CTVTASKFDI NGKGKIVKEE VKKIKVKGTI TVLSQEKKKK GTIMAQEGLL
101: PSVGESLLVE LISAETDPRT PMEKDPVEDY AQRDGHDDQY LQCVFDMPED FGVVGAIRVV NLESKEIFLK EMKLEVPDGP VTFTFNSWVA PKSDDPTKRT
201: FFSNKSYLPL KTPEPLKQLR KQELETLQGK NREGDHEFKK FERVYDYDVY NDVGNPDEDP ELARPVLGGL SHPYPRRCKT GRKPCVIDPS TETRQKDFYV
301: PRDEEFSKVK GDAFTGTAAL AALPAALQQI EAFLLDPNMP FPHFKSIENL FEEGIEIPKD TGLFSLIPRI FKAIAAKAED ILLFESPILL DKDRFSWIRD
401: NEFARQTLAG LNPYCIQLVR EWPLKSKLDP AVYGDPNSLI TSEIVEREIK GVMSFDEALE NKRLFMLDYH DLLLPYVNKV RELDDSTLYA SRTLFFLNDD
501: STLRPVAIEL TRPQDKTRPQ WRHVFTPGYD ATSCWLWTLA KTHAISHDAG YHQLISHWLR THCSMEPYII AANRQLSAMH PIYRLLHPHF RYTMEINARA
601: RQSLVNAGGI IESCFWPGKY SLELSSDVYD KLWRFDREGL PADLISRGLA VEDETAEHGV RLTIPDYPFA NDGLMLWDAL KEWITDYVKH YYPDAEQVRS
701: DEELKEWWNE VKNIGHGDKK NEPWWPDLKT QDDLIGVVTT IAWVASGHHA AVNFGQYGYG GYFPNRPTTS RKKMPVEEPT EDELKEFYEE PEKTMLKTFP
801: SKKQATTVMF TLDLLSAHSP DEEYLGESPE ASWVHEPVIY AAYERFKVKL QYLEGVIDER NLNVSLKNRA GAGVVKYELL KPISGPGVTG MGVPYSVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.