Factsheet for TraesCS6D01G154600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G087900.1
TraesCS4B01G216300.1
TraesCS4D01G216800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	TraesCS4A01G087900.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4B01G216300.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS4D01G216800.1	AT5G18110.1	11117257
AT3G45140.1	TraesCS1A01G149200.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1B01G167100.1	AT5G35620.1	11117257
AT3G45140.1	TraesCS1D01G146500.1	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G193400.1	Wheat	plastid	98.34	98.34
TraesCS6A01G166000.1	Wheat	golgi	98.22	98.22
HORVU6Hr1G033600.1	Barley	plastid	96.12	96.65
Os02t0194700-01	Rice	plasma membrane	76.14	74.08
Zm00001d053675_P001	Maize	plastid	73.03	72.71
KXG29701	Sorghum	plastid	72.7	71.43
Zm00001d015852_P004	Maize	plastid	71.92	71.13
VIT_13s0064g01500.t01	Wine grape	cytosol	17.76	64.0
Solyc01g009680.2.1	Tomato	plastid	30.41	61.85
CDY61034	Canola	cytosol	30.41	61.3
CDY07409	Canola	cytosol	25.97	60.47
TraesCS7D01G029400.1	Wheat	cytosol	17.43	59.25
CDY72550	Canola	cytosol	20.98	58.88
PGSC0003DMT400020118	Potato	cytosol	44.95	58.44
VIT_13s0064g01490.t01	Wine grape	cytosol	25.42	57.39
CDY70843	Canola	cytosol	7.99	57.14
KRH29668	Soybean	nucleus	55.94	55.63
VIT_06s0004g01500.t01	Wine grape	cytosol	48.72	55.5
VIT_06s0004g01480.t01	Wine grape	cytosol	48.83	55.49
KRH29669	Soybean	plastid	55.38	55.38
KRH24671	Soybean	cytosol, plastid	56.16	55.36
VIT_13s0064g01480.t01	Wine grape	plastid	55.38	55.26
VIT_06s0004g01510.t01	Wine grape	plastid	54.83	54.83
PGSC0003DMT400081909	Potato	plastid	54.61	54.73
CDY61881	Canola	cytosol	21.2	53.8
Solyc01g006540.2.1	Tomato	plastid	53.5	53.79
VIT_06s0004g01460.t01	Wine grape	plastid	34.96	52.68
Solyc01g006560.2.1	Tomato	plastid	52.72	52.66
KRG89889	Soybean	cytosol, plastid	50.17	52.56
TraesCS4D01G347300.1	Wheat	cytosol	50.83	51.75
TraesCS5D01G013400.1	Wheat	plastid	53.16	51.62
Solyc12g011040.1.1	Tomato	nucleus, plastid	51.05	51.57
KRG89883	Soybean	cytosol, plastid	49.06	51.46
VIT_06s0004g01470.t01	Wine grape	cytosol	51.5	51.38
TraesCS7D01G244800.1	Wheat	plastid	52.5	50.75
KRH17965	Soybean	plastid	51.61	50.65
KRG89888	Soybean	nucleus	50.5	50.39
CDX91565	Canola	plastid	49.39	49.44
CDY04196	Canola	plastid	48.61	49.27
TraesCS6D01G010100.1	Wheat	plastid	51.28	49.2
CDY61036	Canola	plastid	48.39	49.04
CDX67920	Canola	plastid	49.17	49.0
AT3G45140.1	Thale cress	plastid	48.72	49.0
KRH18682	Soybean	cytosol, mitochondrion	49.5	48.96
Bra003526.1-P	Field mustard	plastid	49.06	48.89
Bra004059.1-P	Field mustard	plastid	46.95	48.85
Bra004060.1-P	Field mustard	plastid	48.72	48.83
CDX79416	Canola	plastid	48.83	48.67
TraesCS5D01G041100.1	Wheat	plastid	50.94	48.57
Bra004057.1-P	Field mustard	cytosol	47.95	48.48
VIT_06s0004g01450.t01	Wine grape	cytosol, extracellular	46.17	48.43
Bra022535.1-P	Field mustard	plastid	42.62	47.35
CDY16339	Canola	plastid	39.96	47.31
TraesCS6D01G122000.1	Wheat	cytosol	15.21	44.19
CDY61880	Canola	plastid	26.86	43.92
TraesCS2D01G313400.1	Wheat	plastid	42.51	42.09
Bra004058.1-P	Field mustard	plastid	48.95	41.68
TraesCS4D01G294100.1	Wheat	plastid	42.4	41.43
CDY07407	Canola	cytosol, plastid	49.28	40.47
TraesCS1D01G215800.2	Wheat	cytosol	37.51	39.95
TraesCS4D01G035100.1	Wheat	cytosol	38.18	39.18
TraesCS4D01G035200.1	Wheat	cytosol	35.74	38.84
CDY07408	Canola	plastid	19.31	37.99
CDY70245	Canola	plastid	19.2	37.77
TraesCS5D01G388700.1	Wheat	cytosol, golgi, unclear	36.07	37.62
TraesCS5D01G388800.1	Wheat	cytosol	37.07	37.24
TraesCS5D01G513100.1	Wheat	cytosol	35.85	37.21
CDY70606	Canola	plastid	15.65	35.7
CDY61882	Canola	plastid	14.87	34.63
TraesCS2D01G528400.1	Wheat	cytosol, mitochondrion	34.63	34.21
TraesCS2D01G528500.1	Wheat	mitochondrion, plastid	34.85	33.87
TraesCS6D01G121900.1	Wheat	mitochondrion	15.87	31.99

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	EnsemblPlantsGene:TraesCS6D01G154600
EnsemblPlants:TraesCS6D01G154600.1	TIGR:cd01751	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:129781000..129784198

Molecular Weight (calculated)

101848.0 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.440

Length

901 amino acids

Sequence
(BLAST)

001: MIHLKQPLVL SAQSSNVASP PLFATAAAAS GQQRRASGAG RSRSGRRLTA RRISCASTEE AVGVSTSVTT KERSLTVTAV VTAQAPTSVY VARGLDDIQD
101: LFGKTLLLEL VSSELDPKTG REREKVKGFA HMTLKEGTYE AKMSVPASFG PVGAVLVENE HHREMFIKDV KLITGGDEST AITFDVASWV HSKFDDPEPR
201: VFFTVKSYLP SQTPPGIEAL RKKELEKLRG DGHSERKFHE RVYDYDTYND LGDPDKNIDH KRPVLGTKEH PYPRRCRTGR PKTLYDPETE RRSSPVYVPR
301: DEQFSDVKGR TFSATTLRSG LHAILPALAP LLNNSQCFSH FPAIDALYSD GIPLPVDGHG GASFNVINDV IPRVVQMIED TTEHVLRFEV PEMLERDRFS
401: WFRDEEFARQ TLAGLNPICI RRLTEFPIVS KLDPAVYGPA ESALTKEVLE KMMNGRMTVE EAVEKKRLFL LDYHDVFLPY VHRVRELPDT TLYGSRTVFF
501: LSEEGTLMPL AIELTRPQSP TRPQWRRAFT HGPDATESWL WKLAKAHVLT HDTGYHQLVS HWLRTHACVE PYIIATNRQL SRMHPVHRLL HPHFRYTMEI
601: NALAREALIN ADGIIEEAFW PGRYSIELSS VAYGAAWQFD TEALPEDLVS RGLAVRRDDG ELELAIKDYP YADDGLLIWG SIKQWASDYV DFYYKSDGDV
701: AGDEELRAWW EEVRTKGHAD KKDEPWWPVC DSKENLVQIL TIIMWVTSGH HAAVNFGQYH YAGYFPNRPT VVRKNIPVEE NRDDEMKKFM ARPEEVLLQS
801: LPSQMQAIKV MATLDILSSH SPDEEYMGEY AEPAWLAEPM VKAAFEKFSG RLKEVEGTID QRNNNPENKN RCGAGIVPYE LLKPFSEPGV TGRGIPNSIS
901: I

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.