CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70843	Canola	cytosol	13.5	95.24
CDY61034	Canola	cytosol	47.69	94.85
CDY72550	Canola	cytosol	34.2	94.7
CDY07409	Canola	cytosol	40.49	93.02
CDY61882	Canola	plastid	39.6	90.96
CDY70606	Canola	plastid	40.16	90.38
CDY70245	Canola	plastid	46.23	89.74
CDY61036	Canola	plastid	88.41	88.41
CDY61880	Canola	plastid	54.67	88.2
CDY61881	Canola	cytosol	34.42	86.2
CDY07408	Canola	plastid	43.87	85.15
CDX79416	Canola	plastid	80.31	78.98
CDX91565	Canola	plastid	79.86	78.89
CDX67920	Canola	plastid	79.64	78.32
CDY16339	Canola	plastid	66.7	77.92
CDY07407	Canola	cytosol, plastid	93.81	76.03
AT3G45140.1	Thale cress	plastid	75.7	75.11
Os12t0559934-00	Rice	cytosol	15.97	72.82
VIT_13s0064g01500.t01	Wine grape	cytosol	19.68	70.0
Solyc01g009680.2.1	Tomato	plastid	32.96	66.14
HORVU3Hr1G047210.1	Barley	cytosol	15.75	64.52
VIT_13s0064g01490.t01	Wine grape	cytosol	28.68	63.91
PGSC0003DMT400020118	Potato	cytosol	46.23	59.31
VIT_13s0064g01480.t01	Wine grape	plastid	58.61	57.7
KRH29669	Soybean	plastid	55.91	55.16
PGSC0003DMT400081909	Potato	plastid	55.57	54.95
Solyc01g006540.2.1	Tomato	plastid	55.34	54.91
GSMUA_Achr3P11780_001	Banana	plastid	51.74	54.37
GSMUA_Achr9P12470_001	Banana	plastid	51.52	54.33
Solyc01g006560.2.1	Tomato	plastid	54.11	53.33
KRG89883	Soybean	cytosol, plastid	51.52	53.32
KRH29668	Soybean	nucleus	53.99	52.98
KRH24671	Soybean	cytosol, plastid	54.11	52.63
OQU80925	Sorghum	cytosol	50.62	52.02
Solyc12g011040.1.1	Tomato	nucleus, plastid	51.97	51.79
KRG89889	Soybean	cytosol, plastid	49.61	51.28
Zm00001d053675_P001	Maize	plastid	51.74	50.83
HORVU7Hr1G050680.1	Barley	peroxisome	39.03	50.73
Os08t0508800-01	Rice	nucleus, plasma membrane	52.31	50.32
KXG29701	Sorghum	plastid	51.86	50.27
Zm00001d015852_P004	Maize	plastid	51.29	50.05
CDY70916	Canola	cytosol	28.35	50.0
KRG89888	Soybean	nucleus	50.62	49.83
KRH17965	Soybean	plastid	51.29	49.67
Os08t0509100-01	Rice	nucleus	52.42	49.52
HORVU6Hr1G033600.1	Barley	plastid	49.83	49.44
TraesCS7D01G029400.1	Wheat	cytosol	14.74	49.43
KRH18682	Soybean	cytosol, mitochondrion	50.39	49.18
TraesCS4D01G347300.1	Wheat	cytosol	48.93	49.15
TraesCS7A01G034900.1	Wheat	mitochondrion	16.2	49.15
Os02t0194700-01	Rice	plasma membrane	51.07	49.03
TraesCS6B01G014400.1	Wheat	cytosol	33.07	48.92
TraesCS6B01G193400.1	Wheat	plastid	49.38	48.72
TraesCS6A01G166000.1	Wheat	golgi	49.27	48.61
TraesCS6D01G154600.1	Wheat	plastid	49.27	48.61
TraesCS7D01G244800.1	Wheat	plastid	49.72	47.42
TraesCS7A01G246200.1	Wheat	plastid	49.61	47.37
TraesCS7B01G145200.1	Wheat	plastid	49.38	47.31
Zm00001d031449_P001	Maize	mitochondrion	50.39	46.86
TraesCS5B01G006500.1	Wheat	plastid	47.81	45.8
TraesCS5D01G013400.1	Wheat	plastid	47.69	45.69
HORVU5Hr1G001180.1	Barley	plastid	47.81	45.65
TraesCS5A01G007900.1	Wheat	plastid	47.58	45.58
Os12t0559200-01	Rice	plastid	47.24	45.55
HORVU6Hr1G000510.1	Barley	plastid	46.68	44.53
TraesCS5B01G033000.1	Wheat	plastid	47.58	44.53
TraesCS5D01G041100.1	Wheat	plastid	47.24	44.44
HORVU7Hr1G006320.4	Barley	plastid	46.23	44.34
TraesCS6D01G010100.1	Wheat	plastid	45.56	43.13
CDX81825	Canola	cytosol	43.42	42.0
CDY64617	Canola	cytosol	43.42	42.0
CDY07417	Canola	plastid	43.31	41.94
CDY12655	Canola	plastid	42.97	41.84
CDY21750	Canola	cytosol, mitochondrion, plastid	43.19	41.78
CDY49853	Canola	plastid	43.19	41.78
CDX96769	Canola	cytosol	43.08	41.68
Os12t0560200-00	Rice	cytosol	4.61	41.41
CDX82146	Canola	plastid	39.48	41.29
CDY51606	Canola	plastid	42.41	41.29
TraesCS5A01G032800.1	Wheat	mitochondrion	38.47	39.81
CDY46325	Canola	cytosol	38.92	39.23
CDY38326	Canola	cytosol	39.03	39.12
CDY64191	Canola	cytosol	39.26	38.48
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	43.42	34.46
CDY43490	Canola	cytosol, plasma membrane	41.62	30.76

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078ESI3	EnsemblPlants:CDY04196	ProteinID:CDY04196	ProteinID:CDY04196.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00117902001	InterPro:IPR001024	InterPro:IPR013819	InterPro:IPR027433
InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS	InterPro:LipOase_plant
InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf	PRINTS:PR00087
PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393	PANTHER:PTHR11771
PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382	UniParc:UPI0004EDF381

Description

BnaC06g26190D

Coordinates

chrLK031950:-:19356..23554

Molecular Weight (calculated)

101249.0 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.417

Length

889 amino acids

Sequence
(BLAST)

001: MFCKEASSGL QTLNIAKSLS SEFTKPSALI NPLSVGHRYK LCPRPNLRGR CTVTASKFDF DWITKERVKK IKVKGIITAK QGLLPSVGFT DLLGISLLVE
101: LISAETDPRT PMEKDPVEDY AQRDGHDDQY LQCVFDMPED FGVVGAIRVV NLESKEIFLK EMKLEVPDGP VTFTFNSWVA PKSEDSTKRT FFSNKSYLPL
201: KTPEPLKQLR KEELETLQGK NRERAGEFEK FERVYDYDVY NDLGNPDKDP ELARPILGGL SHPYPRRCKT GRKPCDKHPS AETRKALEFY VPRDEEFTTV
301: KGAQFTGTAV LSALPAVFPQ IEAALVDPNM PFPHFKSIED LFEEGIELPK DAGLFPVIPR LVKAAAEAND ILQFESPSLL DKDRFSWIRD DEFARQTLAG
401: LNPYCIQLVQ EWPLKSKLDP AVYGDPNSLI TSEIVEREIK GVMSFDEALE NKRLFMLDYH DLLLPYVNKV RELDDSTLYA SRALFFLSDD STLRPVAIEL
501: TRPQDVNKPQ WRQVFTPGYD ATSCWLWSLA KTHAISHDAG YHQLISHWLR THCCMEPYII AANRQLSAMH PIYRLLHPHF RYTMEINARA RQSLVNAGGI
601: IESCFWPGKY SLELSSDVYD KLWRFDREGL PADLVSRGLA VEDETAEHGV RLTVPDYPFA NDGLMLWDAL KEWVTDYVNH YYPDAEQVML DEELQGWWSE
701: VRNIGHGDKK NEPWWPVLKT QEDLIEVVTT IAWVASGHHA AVNFGQYGYG GYFPNRPTTA RTKMPVEEPT EEVLKEFYEE PEKTMLKTFP SKKQATKVML
801: TLDLLSAHSP DEEYLGENPE ASWAHEPIIY AAYERFKGKL QYLEGVIDER NVNVSLKNRT GAGVVKYELL KPISEPGVTG MGVPYSVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.