CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12655	Canola	plastid	98.36	98.36
CDY07417	Canola	plastid	90.8	90.31
AT1G67560.1	Thale cress	plastid	86.2	85.82
PGSC0003DMT400034472	Potato	cytosol	36.03	73.6
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	90.25	73.57
VIT_01s0010g02750.t01	Wine grape	plastid	65.06	64.57
KRH42646	Soybean	plastid	64.29	63.74
Solyc05g014790.2.1	Tomato	plastid	61.34	61.47
PGSC0003DMT400045047	Potato	cytosol, plastid	61.23	61.43
GSMUA_Achr6P28450_001	Banana	plastid	55.97	58.74
CDY61034	Canola	cytosol	25.96	53.02
CDY07409	Canola	cytosol	22.45	52.97
CDY72550	Canola	cytosol	18.62	52.96
CDY70916	Canola	cytosol	28.26	51.19
CDY61881	Canola	cytosol	19.39	49.86
CDY64617	Canola	cytosol	48.63	48.31
CDX96769	Canola	cytosol	48.52	48.2
CDY21750	Canola	cytosol, mitochondrion, plastid	48.52	48.2
CDX82146	Canola	plastid	44.8	48.12
CDX81825	Canola	cytosol	48.19	47.88
CDY49853	Canola	plastid	48.08	47.77
CDY04196	Canola	plastid	41.29	42.41
CDX91565	Canola	plastid	41.62	42.22
CDY16339	Canola	plastid	35.05	42.05
CDX79416	Canola	plastid	41.62	42.04
CDX67920	Canola	plastid	41.51	41.92
CDY61036	Canola	plastid	40.74	41.84
CDY70843	Canola	cytosol	5.59	40.48
CDY46325	Canola	cytosol	37.57	38.89
CDY38326	Canola	cytosol	36.91	37.99
CDY64191	Canola	cytosol	37.35	37.6
CDY07407	Canola	cytosol, plastid	41.51	34.55
CDY61880	Canola	plastid	20.81	34.48
CDY70245	Canola	plastid	15.66	31.22
CDY07408	Canola	plastid	15.22	30.35
CDY43490	Canola	cytosol, plasma membrane	39.43	29.93
CDY70606	Canola	plastid	12.6	29.11
CDY61882	Canola	plastid	11.39	26.87

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078INS8	UniProt:A0A078INS8	EnsemblPlants:CDY51606	ProteinID:CDY51606	ProteinID:CDY51606.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702
GO:GO:0031408	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00003836001	InterPro:IPR001024
InterPro:IPR013819	InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf
InterPro:LipOase_Fe_BS	InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF60	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382
UniParc:UPI0004EF20EE	SEG:seg	:	:	:	:

Description

BnaC02g45800DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078INS8]

Coordinates

chrLK033012:-:6218..20115

Molecular Weight (calculated)

104297.0 Da

IEP (calculated)

7.924

GRAVY (calculated)

-0.498

Length

913 amino acids

Sequence
(BLAST)

001: MFVASPVKSN SYGAGLVRFP AFPVLPRRRQ HIVPLSRKVR AVISREEKTV DQEDGKNTNG SLVSNSPAFP WQRSKYTGTK TVIAVVKIRK KMREKLTERV
101: EHQLELLMKA IGQGMLIQLV SEEIDPETGS GRKSSETPVL GLPKARNDSR YLEFTANFTV PTDFGKPGAI LVTNLLSSEI CLSEIIIHYG SDTILFPGNT
201: WIHSRNDNPE GRIIFASQTW LPSETPAGIK ELREKDLKSV RGNGEGERKP HERIYDYDIY NDIGDPRKKD RVRPILGVPE RPYPRRCRSG RPLLSTDTPF
301: ESRGKDKDEF YVPRDEVFED IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID RLYKSDIVLK HTEGKDKGLG GFIDGILNVG ETLLRYDTPA
401: VIKWDRFAWL RDNEFGRQAL AGVNPVNIEL LKELPIRSKL DPAIYGSPES ALTEELIAHE VLHYGMTLEQ AFEEKRLFLL DYHDMLLPFV DKINSIKEDP
501: RKTYASRTIF FYSKAGALRP LAIELSLPPT PENENKFVYA HGHDATTHWI WKLAKAHVCS NDAGVHQLVN HWLRTHACME PYIIATNRQL SSMHPVYKLL
601: HPHMRYTLEI NARARKSLIN GGGIIESCFT PGKYAMELSS AAYKSMWRFD MEGLPADLVR RGMAEEDSSA ECGVKLVIED YPYAADGLLI WKAIKNLVES
701: YVKHFYSDPD SITSDFELQA WWDEIKNKGH YDKKDEPWWP KPNTTQYLSE ILTNMIWIAS GQHAALNFGQ YPFGGYVPNR PTLLRKLIPH ENDPDYEMFM
801: RNPQYSFLSS LPTQLQATKV MAVQETLSTH SADEEYLIDL KENQRRWFQD EEVVKYFSKF TEELEEIEKK INKRNKDKKL KNRTGAGMPP YELLIPTSPH
901: GVTGRGIPNS ISI

Best Arabidopsis Sequence Match ( AT1G67560.1 )
(BLAST)

001: MFVASPVKTN FNGVSLVKSP AFSALSCRKQ HRVPISRQVR AVISREEKAV DQEDGKKSTN KPLINSSQFP WQRSKYTGSK TVTAVVKIRK KIKEKLTERF
101: EHQLELFMKA IGQGMLIQLV SEEIDPETGK GRKSLESPVM GLPKAVKDPR YLVFTADFTV PINFGKPGAI LVTNLLSTEI CLSEIIIEDS TDTILFPANT
201: WIHSKNDNPQ ARIIFRSQPC LPSETPDGIK ELREKDLVSV RGDGKGERKP HERIYDYDVY NDLGDPRKTE RVRPVLGVPE TPYPRRCRTG RPLVSKDPPC
301: ESRGKEKEEF YVPRDEVFEE IKRDTFRAGR FKALFHNLVP SIAAALSNLD IPFTCFSDID NLYKSNIVLG HTEPKDTGLG GFIGGFMNGI LNVTETLLKY
401: DTPAVIKWDR FAWLRDNEFG RQALAGVNPV NIELLKELPI RSNLDPALYG PQESVLTEEI IAREVEHYGT TIEKALEEKR LFLVDYHDIL LPFVEKINSI
501: KEDPRKTYAS RTIFFYSKNG ALRPLAIELS LPPTAESENK FVYTHGHDAT THWIWKLAKA HVCSNDAGVH QLVNHWLRTH ASMEPYIIAT NRQLSTMHPV
601: YKLLHPHMRY TLEINARARK SLINGGGIIE SCFTPGKYAM ELSSAAYKSM WRFDMEGLPA DLVRRGMAEE DSSAECGVRL VIDDYPYAAD GLLIWKAIKD
701: LVESYVKHFY SDSKSITSDL ELQAWWDEIK NKGHYDKKDE PWWPKLNTTQ DLSQILTNMI WIASGQHAAI NFGQYPFGGY VPNRPTLLRK LIPQETDPDY
801: EMFMRNPQYS FLGSLPTQLQ ATKVMAVQET LSTHSPDEEY LIELREVQRH WFQDEQVVKY FNKFSEELVK IEKTINERNK DKKLKNRTGA GMPPYELLLP
901: TSPHGVTGRG IPNSISI

Arabidopsis Description

LOX6Lipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1Z8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.