Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07408 | Canola | plastid | 78.95 | 94.98 |
| CDY70245 | Canola | plastid | 75.68 | 91.05 |
| CDY70606 | Canola | plastid | 61.52 | 85.82 |
| CDY61882 | Canola | plastid | 60.25 | 85.79 |
| CDY16339 | Canola | plastid | 75.86 | 54.93 |
| CDY04196 | Canola | plastid | 88.2 | 54.67 |
| CDY61036 | Canola | plastid | 83.3 | 51.63 |
| VIT_13s0064g01490.t01 | Wine grape | cytosol | 34.3 | 47.37 |
| CDY07407 | Canola | cytosol, plastid | 93.1 | 46.76 |
| CDX91565 | Canola | plastid | 75.32 | 46.11 |
| CDX79416 | Canola | plastid | 74.59 | 45.46 |
| CDX67920 | Canola | plastid | 74.41 | 45.35 |
| AT3G45140.1 | Thale cress | plastid | 70.24 | 43.19 |
| Os12t0559934-00 | Rice | cytosol | 13.61 | 38.46 |
| HORVU3Hr1G047210.1 | Barley | cytosol | 14.88 | 37.79 |
| GSMUA_Achr9P12470_001 | Banana | plastid | 49.18 | 32.15 |
| GSMUA_Achr3P11780_001 | Banana | plastid | 47.91 | 31.21 |
| KRH29669 | Soybean | plastid | 50.27 | 30.74 |
| VIT_13s0064g01480.t01 | Wine grape | plastid | 49.73 | 30.34 |
| PGSC0003DMT400081909 | Potato | plastid | 47.55 | 29.14 |
| Solyc01g006540.2.1 | Tomato | plastid | 46.1 | 28.35 |
| Zm00001d053675_P001 | Maize | plastid | 46.46 | 28.29 |
| Solyc01g006560.2.1 | Tomato | plastid | 46.28 | 28.27 |
| KRG89883 | Soybean | cytosol, plastid | 43.92 | 28.17 |
| KRH29668 | Soybean | nucleus | 46.28 | 28.15 |
| KRG89889 | Soybean | cytosol, plastid | 43.74 | 28.02 |
| KRH24671 | Soybean | cytosol, plastid | 46.46 | 28.01 |
| Zm00001d015852_P004 | Maize | plastid | 45.92 | 27.77 |
| Solyc12g011040.1.1 | Tomato | nucleus, plastid | 44.83 | 27.69 |
| OQU80925 | Sorghum | cytosol | 43.38 | 27.63 |
| KRG89888 | Soybean | nucleus | 45.19 | 27.57 |
| HORVU6Hr1G033600.1 | Barley | plastid | 44.46 | 27.34 |
| KXG29701 | Sorghum | plastid | 45.37 | 27.26 |
| Os08t0508800-01 | Rice | nucleus, plasma membrane | 45.55 | 27.16 |
| PGSC0003DMT400020118 | Potato | cytosol | 34.12 | 27.13 |
| Os08t0509100-01 | Rice | nucleus | 46.28 | 27.1 |
| TraesCS6D01G154600.1 | Wheat | plastid | 43.92 | 26.86 |
| Os02t0194700-01 | Rice | plasma membrane | 45.01 | 26.78 |
| HORVU7Hr1G050680.1 | Barley | peroxisome | 33.21 | 26.75 |
| TraesCS6A01G166000.1 | Wheat | golgi | 43.74 | 26.75 |
| KRH17965 | Soybean | plastid | 44.46 | 26.69 |
| TraesCS6B01G193400.1 | Wheat | plastid | 43.56 | 26.64 |
| KRH18682 | Soybean | cytosol, mitochondrion | 43.38 | 26.23 |
| TraesCS4D01G347300.1 | Wheat | cytosol | 40.83 | 25.42 |
| Zm00001d031449_P001 | Maize | mitochondrion | 44.1 | 25.42 |
| TraesCS7D01G244800.1 | Wheat | plastid | 42.65 | 25.21 |
| TraesCS7A01G246200.1 | Wheat | plastid | 42.47 | 25.13 |
| TraesCS7B01G145200.1 | Wheat | plastid | 42.29 | 25.11 |
| CDY61034 | Canola | cytosol | 20.33 | 25.06 |
| TraesCS5B01G006500.1 | Wheat | plastid | 41.92 | 24.89 |
| TraesCS5A01G007900.1 | Wheat | plastid | 41.92 | 24.89 |
| TraesCS5D01G013400.1 | Wheat | plastid | 41.92 | 24.89 |
| HORVU5Hr1G001180.1 | Barley | plastid | 41.38 | 24.49 |
| HORVU6Hr1G000510.1 | Barley | plastid | 41.02 | 24.25 |
| Os12t0559200-01 | Rice | plastid | 40.11 | 23.97 |
| CDX82146 | Canola | plastid | 36.66 | 23.76 |
| HORVU7Hr1G006320.4 | Barley | plastid | 39.56 | 23.52 |
| TraesCS6D01G010100.1 | Wheat | plastid | 38.84 | 22.79 |
| CDX81825 | Canola | cytosol | 37.21 | 22.31 |
| CDY21750 | Canola | cytosol, mitochondrion, plastid | 37.02 | 22.2 |
| TraesCS5D01G041100.1 | Wheat | plastid | 37.93 | 22.12 |
| CDY64617 | Canola | cytosol | 36.84 | 22.09 |
| CDY49853 | Canola | plastid | 36.48 | 21.87 |
| CDX96769 | Canola | cytosol | 36.48 | 21.87 |
| TraesCS5B01G033000.1 | Wheat | plastid | 37.57 | 21.79 |
| CDY07417 | Canola | plastid | 35.57 | 21.35 |
| CDY12655 | Canola | plastid | 34.66 | 20.92 |
| CDY51606 | Canola | plastid | 34.48 | 20.81 |
| CDY46325 | Canola | cytosol | 33.21 | 20.75 |
| CDY38326 | Canola | cytosol | 33.39 | 20.74 |
| CDY64191 | Canola | cytosol | 33.39 | 20.29 |
| TraesCS5A01G032800.1 | Wheat | mitochondrion | 28.13 | 18.04 |
| CDY28879 | Canola | cytosol, endoplasmic reticulum, plastid | 35.93 | 17.68 |
| TraesCS6B01G014400.1 | Wheat | cytosol | 19.24 | 17.64 |
| CDY43490 | Canola | cytosol, plasma membrane | 36.12 | 16.54 |
| CDY70916 | Canola | cytosol | 14.52 | 15.87 |
| Solyc01g009680.2.1 | Tomato | plastid | 11.07 | 13.77 |
| CDY07409 | Canola | cytosol | 7.44 | 10.59 |
| CDY61881 | Canola | cytosol | 3.09 | 4.79 |
| TraesCS7A01G034900.1 | Wheat | mitochondrion | 1.63 | 3.07 |
| TraesCS7D01G029400.1 | Wheat | cytosol | 0.0 | 0.0 |
| CDY70843 | Canola | cytosol | 0.0 | 0.0 |
| VIT_13s0064g01500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| CDY72550 | Canola | cytosol | 0.0 | 0.0 |
| Os12t0560200-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.60.20 | Gene3D:3.10.450.60 | Gene3D:4.10.372.10 | Gene3D:4.10.375.10 | MapMan:50.1.12 | GO:A0A078J8V5 |
| UniProt:A0A078J8V5 | EnsemblPlants:CDY61880 | ProteinID:CDY61880 | ProteinID:CDY61880.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016702 |
| GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00034534001 | InterPro:IPR001024 | InterPro:IPR013819 |
| InterPro:IPR027433 | InterPro:LipOase | InterPro:LipOase_C | InterPro:LipOase_C_sf | InterPro:LipOase_plant | InterPro:Lipoxygenase_dom_3 |
| PFAM:PF00305 | PFAM:PF01477 | InterPro:PLAT/LH2_dom | InterPro:PLAT/LH2_dom_sf | PRINTS:PR00468 | PFscan:PS50095 |
| PFscan:PS51393 | PANTHER:PTHR11771 | PANTHER:PTHR11771:SF89 | SMART:SM00308 | SUPFAM:SSF48484 | SUPFAM:SSF49723 |
| UniPathway:UPA00382 | UniParc:UPI0004EDF46D | SEG:seg | : | : | : |
Description
BnaCnng38620DBnaCnng38620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8V5]
Coordinates
chrLK034055:+:22039..25561
Molecular Weight (calculated)
62576.0 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.404
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCKEASSSL QTLNIAKSLS SEFTKPSALI NPLSAGHRYK LCPRPNLRGR CTVTASKFDI DWRAKERVKK IKVKGIITAK QGLLPSVGFT DLLGVSLLVE
101: LISAETDPQT LMEKDPVKDH ARRLVIDAHG EDQYECVFDM PKDFGAVGAI RVLNEAHREI FLKEMKLELP DGPVTFTCNS WVASKSDDPT KRTFFSNKSY
201: LPLQTPEPLK QLRKEELETL QGKNRERDGE LKKFERVYDY DVYNDVGDPD KDPKLARPVM GGLSHPYPRR CKTGRKPSRK YPSIETRKGD FYVPRDEEWS
301: TVKGTAFTGT TILAALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKKAGLFPLI PRLVKAVAEA DDILQFDSPI LLDKDRFSWI RDDEFARQTL
401: AGLNPLCIGL VQEWPLKSKL DPAVYGDPNS LITSEIVERE IKGVMSFDEA LENKRLFMLD YHDLLLPYVN KVRELDDSTL YASRTLFFLN DDSTLRPVAI
501: ELTRPQDVNR PQWRQVFTPG YDATSCWLWS LAKTHAITHD AGYHQLISHC I
101: LISAETDPQT LMEKDPVKDH ARRLVIDAHG EDQYECVFDM PKDFGAVGAI RVLNEAHREI FLKEMKLELP DGPVTFTCNS WVASKSDDPT KRTFFSNKSY
201: LPLQTPEPLK QLRKEELETL QGKNRERDGE LKKFERVYDY DVYNDVGDPD KDPKLARPVM GGLSHPYPRR CKTGRKPSRK YPSIETRKGD FYVPRDEEWS
301: TVKGTAFTGT TILAALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKKAGLFPLI PRLVKAVAEA DDILQFDSPI LLDKDRFSWI RDDEFARQTL
401: AGLNPLCIGL VQEWPLKSKL DPAVYGDPNS LITSEIVERE IKGVMSFDEA LENKRLFMLD YHDLLLPYVN KVRELDDSTL YASRTLFFLN DDSTLRPVAI
501: ELTRPQDVNR PQWRQVFTPG YDATSCWLWS LAKTHAITHD AGYHQLISHC I
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
Arabidopsis Description
LOX3Lipoxygenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LNR3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.