CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70795
CDX74645
CDX78777
CDX84118
CDY02645
CDY06456
CDY33686
CDY38487
CDY38545
CDY45630
CDY49143
CDY49364
CDY53257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45140.1	CDX70795	AT5G18110.1	11117257
AT3G45140.1	CDX78777	AT5G18110.1	11117257
AT3G45140.1	CDY02645	AT5G18110.1	11117257
AT3G45140.1	CDY38487	AT5G18110.1	11117257
AT3G45140.1	CDY45630	AT5G18110.1	11117257
AT3G45140.1	CDY49143	AT5G18110.1	11117257
AT3G45140.1	CDY53257	AT5G18110.1	11117257
AT3G45140.1	CDX74645	AT5G35620.1	11117257
AT3G45140.1	CDX84118	AT5G35620.1	11117257
AT3G45140.1	CDY06456	AT5G35620.1	11117257
AT3G45140.1	CDY33686	AT5G35620.1	11117257
AT3G45140.1	CDY38545	AT5G35620.1	11117257
AT3G45140.1	CDY49364	AT5G35620.1	11117257

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70245	Canola	plastid	40.29	96.51
Bra004057.1-P	Field mustard	cytosol	78.21	96.3
CDY70843	Canola	cytosol	11.03	96.03
CDY72550	Canola	cytosol	28.08	95.95
CDY61034	Canola	cytosol	38.92	95.53
CDY07409	Canola	cytosol	33.55	95.09
CDY04196	Canola	plastid	76.03	93.81
CDY61880	Canola	plastid	46.76	93.1
CDY07408	Canola	plastid	38.29	91.7
CDY70606	Canola	plastid	31.63	87.85
CDY61881	Canola	cytosol	28.35	87.61
CDY61882	Canola	plastid	30.81	87.34
CDY61036	Canola	plastid	69.46	85.71
CDX79416	Canola	plastid	65.91	79.98
CDX91565	Canola	plastid	65.45	79.78
CDX67920	Canola	plastid	65.45	79.42
CDY16339	Canola	plastid	54.6	78.71
AT3G45140.1	Thale cress	plastid	61.71	75.56
Os12t0559934-00	Rice	cytosol	12.85	72.31
VIT_13s0064g01500.t01	Wine grape	cytosol	15.59	68.4
Solyc01g009680.2.1	Tomato	plastid	26.71	66.14
VIT_13s0064g01490.t01	Wine grape	cytosol	22.97	63.16
HORVU3Hr1G047210.1	Barley	cytosol	12.49	63.13
PGSC0003DMT400020118	Potato	cytosol	37.47	59.31
VIT_13s0064g01480.t01	Wine grape	plastid	47.68	57.92
KRH29669	Soybean	plastid	45.67	55.6
PGSC0003DMT400081909	Potato	plastid	44.94	54.84
Solyc01g006540.2.1	Tomato	plastid	44.76	54.8
GSMUA_Achr3P11780_001	Banana	plastid	41.84	54.26
GSMUA_Achr9P12470_001	Banana	plastid	41.66	54.21
Solyc01g006560.2.1	Tomato	plastid	44.48	54.1
KRG89883	Soybean	cytosol, plastid	42.02	53.67
KRH29668	Soybean	nucleus	44.3	53.64
KRH24671	Soybean	cytosol, plastid	44.21	53.06
Solyc12g011040.1.1	Tomato	nucleus, plastid	42.39	52.13
OQU80925	Sorghum	cytosol	40.84	51.79
Zm00001d053675_P001	Maize	plastid	42.57	51.6
KRG89889	Soybean	cytosol, plastid	40.29	51.4
Zm00001d015852_P004	Maize	plastid	42.21	50.82
KXG29701	Sorghum	plastid	42.48	50.82
CDY70916	Canola	cytosol	23.15	50.4
HORVU7Hr1G050680.1	Barley	peroxisome	31.36	50.29
KRG89888	Soybean	nucleus	41.11	49.94
KRH17965	Soybean	plastid	41.75	49.89
Os02t0194700-01	Rice	plasma membrane	42.02	49.78
Os08t0508800-01	Rice	nucleus, plasma membrane	41.93	49.78
HORVU6Hr1G033600.1	Barley	plastid	40.66	49.78
TraesCS4D01G347300.1	Wheat	cytosol	39.84	49.38
KRH18682	Soybean	cytosol, mitochondrion	40.93	49.29
TraesCS6A01G166000.1	Wheat	golgi	40.47	49.28
TraesCS6D01G154600.1	Wheat	plastid	40.47	49.28
TraesCS6B01G193400.1	Wheat	plastid	40.38	49.17
Os08t0509100-01	Rice	nucleus	42.02	48.99
TraesCS7D01G029400.1	Wheat	cytosol	11.67	48.3
TraesCS6B01G014400.1	Wheat	cytosol	26.34	48.09
TraesCS7A01G034900.1	Wheat	mitochondrion	12.76	47.78
TraesCS7D01G244800.1	Wheat	plastid	40.29	47.42
TraesCS7A01G246200.1	Wheat	plastid	40.2	47.37
TraesCS7B01G145200.1	Wheat	plastid	40.02	47.31
Zm00001d031449_P001	Maize	mitochondrion	40.66	46.65
HORVU5Hr1G001180.1	Barley	plastid	38.56	45.44
TraesCS5B01G006500.1	Wheat	plastid	38.38	45.37
TraesCS5D01G013400.1	Wheat	plastid	38.29	45.26
TraesCS5A01G007900.1	Wheat	plastid	38.29	45.26
Os12t0559200-01	Rice	plastid	38.01	45.23
HORVU6Hr1G000510.1	Barley	plastid	37.83	44.53
HORVU7Hr1G006320.4	Barley	plastid	37.37	44.23
TraesCS5D01G041100.1	Wheat	plastid	37.83	43.92
TraesCS5B01G033000.1	Wheat	plastid	37.92	43.79
TraesCS6D01G010100.1	Wheat	plastid	36.83	43.02
CDY07417	Canola	plastid	35.37	42.27
CDY49853	Canola	plastid	35.37	42.22
CDX81825	Canola	cytosol	35.28	42.11
CDY64617	Canola	cytosol	35.28	42.11
CDY12655	Canola	plastid	35.0	42.06
CDY21750	Canola	cytosol, mitochondrion, plastid	35.19	42.0
CDX96769	Canola	cytosol	35.0	41.78
CDX82146	Canola	plastid	32.36	41.76
CDY51606	Canola	plastid	34.55	41.51
Os12t0560200-00	Rice	cytosol	3.74	41.41
TraesCS5A01G032800.1	Wheat	mitochondrion	30.99	39.58
CDY38326	Canola	cytosol	31.54	39.01
CDY46325	Canola	cytosol	31.36	39.0
CDY64191	Canola	cytosol	31.63	38.26
CDY28879	Canola	cytosol, endoplasmic reticulum, plastid	35.37	34.64
CDY43490	Canola	cytosol, plasma membrane	34.18	31.17

Protein Annotations

Gene3D:1.20.245.10	MapMan:11.7.1.2	Gene3D:2.60.60.20	Gene3D:3.10.450.60	Gene3D:4.10.372.10	Gene3D:4.10.375.10
GO:A0A078F2V2	UniProt:A0A078F2V2	EnsemblPlants:CDY07407	ProteinID:CDY07407	ProteinID:CDY07407.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016702	GO:GO:0031408
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00124394001	InterPro:IPR001024	InterPro:IPR013819
InterPro:IPR027433	InterPro:LipOase	InterPro:LipOase_C	InterPro:LipOase_CS	InterPro:LipOase_C_sf	InterPro:LipOase_Fe_BS
InterPro:LipOase_plant	InterPro:Lipoxygenase_dom_3	PFAM:PF00305	PFAM:PF01477	InterPro:PLAT/LH2_dom	InterPro:PLAT/LH2_dom_sf
PRINTS:PR00087	PRINTS:PR00468	ScanProsite:PS00081	ScanProsite:PS00711	PFscan:PS50095	PFscan:PS51393
PANTHER:PTHR11771	PANTHER:PTHR11771:SF89	SMART:SM00308	SUPFAM:SSF48484	SUPFAM:SSF49723	UniPathway:UPA00382
UniParc:UPI0004EE572C	SEG:seg	:	:	:	:

Description

BnaA07g24860DLipoxygenase [Source:UniProtKB/TrEMBL;Acc:A0A078F2V2]

Coordinates

chrLK031978:+:488405..493645

Molecular Weight (calculated)

125241.0 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.443

Length

1097 amino acids

Sequence
(BLAST)

0001: MFCKEASSGL QTLNIAKNLS SEFTKPSALI NPLSAGHRYK LCPRPNLRGR CTVTASKFDF DWITKERVKK IKVKGIITAK QGLLPSVGFT DLLGISLLVE
0101: LISAETDPRT LMEKDPVKDH ARRLVIDAHG EDQYECVFDM PEDFGAVGAI RVLNEAHREI FLKEMKLELP DGPVTFTCNS WVASKSEDPT KRTFFSNKSY
0201: LPLQTPEPLK QLRKEELESL RGKNRKHSGE FEKFERVYDY DVYNDVGDPE KDPELARPVI GGLSHPYPRR CKTGRKPSRK YPSIETRKGE FYVPRDEEFT
0301: TIKGATFTGK AVLAALPAVF PQIEAALVDP NMPFPHFKSI EDLFEEGIEL PKDAGLFPMI PRLVKAAAEA DDILQFESPI LLDKDRFSWI RDDEFARQTL
0401: AGLNPYCIQL VQEWPLKSKL DPAVYGDPNS LITSEIVERE IKGVMSFDEA LENKRLFMLD YHDLLLPYVN KVRELDDSTL YASRALFFLS DNSTLRPVAI
0501: ELTRPQDVNR PQWRQVFTPG YDATSCWLWS LAKTHAITHD AGYHQLISHW LRTHCCMEPY IIAANRQLSA MHPIYRLLHP HFRYTMEINA RARQSLVNAG
0601: GIIESCFWPG KYSLELSSDV YDKLWRFDRE GLPADLVSRG LAVEDETAEH GVRLTVPDYP FANDGLMLWD ALKEWVTDYV NHYYPDAEQV MLDEELQGWW
0701: SEVRNIGHGD KKNEPWWPVL KTQDDLIEVV TTIAWVASGH HAAVNFGQYG YGGYFPNRPT TSRIKMPVEE PTEEELKEFY KDPEKTMLKT FPSKKQATKL
0801: MLTLDLLSTH SPDEEYLGEN AEASWAHEPV IYAAYERFKG KLQYLEGVID ERNCSKNRLR RIGSKLINSS VPTFKISKID LSVQNRGLAV EDETAEHGVR
0901: LTIPDYPFAN DGLMLWDALK EWVMLDEELQ GWWSEVRNIG HGDKKNEPWW PVLKTQDDLI EVVTTIAWVA SGHHAAPTEE VLKEFYDEPE KTMLKTFPSK
1001: KQATKVMLTL DLLSAHSPDE EYLGENPEAS WAHEPVIYAA YERFKGKLQY LEGVIDERNV NVSLKNRTGA GVVKYELLKP ISEPGVTGMG VPYSVSI

Best Arabidopsis Sequence Match ( AT3G45140.1 )
(BLAST)

001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI

Arabidopsis Description

LOX2Lipoxygenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P38418]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.